miRNA display CGI


Results 1 - 20 of 37 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12803 3' -57.7 NC_003387.1 + 3667 0.72 0.223804
Target:  5'- uGCCcGGUG-AGCGCCAGCagcgcaaccgucgaGCCGGuGAUg -3'
miRNA:   3'- -CGGuCCACuUUGCGGUCG--------------UGGCC-CUA- -5'
12803 3' -57.7 NC_003387.1 + 9558 0.68 0.416561
Target:  5'- cGCCGGGgugGAuuCGCCAGCACgCGc--- -3'
miRNA:   3'- -CGGUCCa--CUuuGCGGUCGUG-GCccua -5'
12803 3' -57.7 NC_003387.1 + 10966 0.67 0.451129
Target:  5'- cGCCGGGUGAucggaagaauauCGgCGGCGCCGcaaaGGGUa -3'
miRNA:   3'- -CGGUCCACUuu----------GCgGUCGUGGC----CCUA- -5'
12803 3' -57.7 NC_003387.1 + 16571 0.67 0.455066
Target:  5'- -gCAGGUGcgcAACGgCGGCaacGCCGGGAc -3'
miRNA:   3'- cgGUCCACu--UUGCgGUCG---UGGCCCUa -5'
12803 3' -57.7 NC_003387.1 + 18693 0.66 0.526708
Target:  5'- aCCgGGGUGggGCGCC-GUGCCGaGGc- -3'
miRNA:   3'- cGG-UCCACuuUGCGGuCGUGGC-CCua -5'
12803 3' -57.7 NC_003387.1 + 18697 0.69 0.389024
Target:  5'- aCCAGGUGcggguCGCgCAGCGCCaGGGc -3'
miRNA:   3'- cGGUCCACuuu--GCG-GUCGUGGcCCUa -5'
12803 3' -57.7 NC_003387.1 + 18951 0.68 0.449167
Target:  5'- aGCCGGGccAAACGCUcgcGGCgccgccguugcccuuGCCGGGGUg -3'
miRNA:   3'- -CGGUCCacUUUGCGG---UCG---------------UGGCCCUA- -5'
12803 3' -57.7 NC_003387.1 + 22176 0.69 0.362708
Target:  5'- cCCAGGcgGggGCGgCGGUAUCGGGu- -3'
miRNA:   3'- cGGUCCa-CuuUGCgGUCGUGGCCCua -5'
12803 3' -57.7 NC_003387.1 + 23815 0.68 0.397159
Target:  5'- cGCgCAGcagauacGUGAgGGCGCC-GCGCCGGGAc -3'
miRNA:   3'- -CG-GUC-------CACU-UUGCGGuCGUGGCCCUa -5'
12803 3' -57.7 NC_003387.1 + 24658 0.71 0.270196
Target:  5'- cGCgAGGU----CGCCAGCGCCGaGGGUg -3'
miRNA:   3'- -CGgUCCAcuuuGCGGUCGUGGC-CCUA- -5'
12803 3' -57.7 NC_003387.1 + 25296 0.67 0.505756
Target:  5'- aGCCAGG-GcGACGUCGGCGCgGuGGu- -3'
miRNA:   3'- -CGGUCCaCuUUGCGGUCGUGgC-CCua -5'
12803 3' -57.7 NC_003387.1 + 26807 0.66 0.526708
Target:  5'- gGCCGcgcugguggucGGUGAGcGCGCCgcccuGGaCGCCGGGGa -3'
miRNA:   3'- -CGGU-----------CCACUU-UGCGG-----UC-GUGGCCCUa -5'
12803 3' -57.7 NC_003387.1 + 27148 0.66 0.526708
Target:  5'- cGCCGGGgucGGCGCC---GCCGGGGa -3'
miRNA:   3'- -CGGUCCacuUUGCGGucgUGGCCCUa -5'
12803 3' -57.7 NC_003387.1 + 27500 0.67 0.475026
Target:  5'- gGCCgAGGUGccgcuAAACGUCAGCACCauGAUg -3'
miRNA:   3'- -CGG-UCCAC-----UUUGCGGUCGUGGccCUA- -5'
12803 3' -57.7 NC_003387.1 + 28671 0.68 0.416561
Target:  5'- cGCCAGGUGAAucUGCgAGCACaggccgagcgaCGGGu- -3'
miRNA:   3'- -CGGUCCACUUu-GCGgUCGUG-----------GCCCua -5'
12803 3' -57.7 NC_003387.1 + 30247 0.75 0.154958
Target:  5'- gGCCGGGUcGucGGgGUCGGCGCCGGGGUc -3'
miRNA:   3'- -CGGUCCA-Cu-UUgCGGUCGUGGCCCUA- -5'
12803 3' -57.7 NC_003387.1 + 30368 0.76 0.125602
Target:  5'- cGCCGGGU---GCGCCugggccagccccaccGGCGCCGGGAg -3'
miRNA:   3'- -CGGUCCAcuuUGCGG---------------UCGUGGCCCUa -5'
12803 3' -57.7 NC_003387.1 + 30487 0.75 0.154958
Target:  5'- uGCCcguuauAGGUGAAAuUGCCGGgGCCGGGGc -3'
miRNA:   3'- -CGG------UCCACUUU-GCGGUCgUGGCCCUa -5'
12803 3' -57.7 NC_003387.1 + 31029 0.66 0.536244
Target:  5'- cGCCGGGgcggcGGccagcacggcaccGGCGCCgauGGCACCGGcGAc -3'
miRNA:   3'- -CGGUCCa----CU-------------UUGCGG---UCGUGGCC-CUa -5'
12803 3' -57.7 NC_003387.1 + 31124 0.67 0.485169
Target:  5'- cGCCAGGUG-GGCGCC-GC-CCGaGAa -3'
miRNA:   3'- -CGGUCCACuUUGCGGuCGuGGCcCUa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.