miRNA display CGI


Results 21 - 40 of 93 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12804 5' -55.6 NC_003387.1 + 24580 0.73 0.367803
Target:  5'- gCCggGCUCGAUCGUGgggcgcuugcgggCCUCGGCGAUc -3'
miRNA:   3'- gGG--UGAGCUAGCGCa------------GGAGCUGCUGc -5'
12804 5' -55.6 NC_003387.1 + 28824 0.73 0.379778
Target:  5'- gCCACcaagaCGAUCGUGUgCUCGcCGACGu -3'
miRNA:   3'- gGGUGa----GCUAGCGCAgGAGCuGCUGC- -5'
12804 5' -55.6 NC_003387.1 + 34546 0.72 0.397334
Target:  5'- aCCCGCUCGAcgacgUCGUGUauaucgCCgggcCGAUGACGg -3'
miRNA:   3'- -GGGUGAGCU-----AGCGCA------GGa---GCUGCUGC- -5'
12804 5' -55.6 NC_003387.1 + 13606 0.72 0.406305
Target:  5'- aCCGCUaCGGUCGUGcaCCUCGAUGAa- -3'
miRNA:   3'- gGGUGA-GCUAGCGCa-GGAGCUGCUgc -5'
12804 5' -55.6 NC_003387.1 + 10556 0.72 0.406305
Target:  5'- -gCGCUCGGUCaGC-UCCUCGAuCGACa -3'
miRNA:   3'- ggGUGAGCUAG-CGcAGGAGCU-GCUGc -5'
12804 5' -55.6 NC_003387.1 + 29439 0.71 0.433965
Target:  5'- gCCCGCgCGGUCGCuaUCCUCGcgaucgagaACGGCGc -3'
miRNA:   3'- -GGGUGaGCUAGCGc-AGGAGC---------UGCUGC- -5'
12804 5' -55.6 NC_003387.1 + 33222 0.71 0.443425
Target:  5'- gCCCGCUCGGcgaUgGcCGUCaagacguacgugCUCGACGACGu -3'
miRNA:   3'- -GGGUGAGCU---AgC-GCAG------------GAGCUGCUGC- -5'
12804 5' -55.6 NC_003387.1 + 48822 0.71 0.443425
Target:  5'- uCCCGC-CGGUCGUGcUgCUCGgcGCGACGc -3'
miRNA:   3'- -GGGUGaGCUAGCGC-AgGAGC--UGCUGC- -5'
12804 5' -55.6 NC_003387.1 + 6355 0.71 0.443425
Target:  5'- gCCCAC-CGuGUCGCGcuuggCCUCGGCcGCGg -3'
miRNA:   3'- -GGGUGaGC-UAGCGCa----GGAGCUGcUGC- -5'
12804 5' -55.6 NC_003387.1 + 2275 0.71 0.456862
Target:  5'- gUCgGCUCGA-CGuCGUCCUCGcuggcguacgccgagGCGACGa -3'
miRNA:   3'- -GGgUGAGCUaGC-GCAGGAGC---------------UGCUGC- -5'
12804 5' -55.6 NC_003387.1 + 52431 0.71 0.472482
Target:  5'- aCCgGCUCGGUCGUGaucgugCaCUCGACcGGCGc -3'
miRNA:   3'- -GGgUGAGCUAGCGCa-----G-GAGCUG-CUGC- -5'
12804 5' -55.6 NC_003387.1 + 46245 0.7 0.496403
Target:  5'- gCCCGgUUGGUCGCGccgacaaugucggacUCgUUGGCGACGc -3'
miRNA:   3'- -GGGUgAGCUAGCGC---------------AGgAGCUGCUGC- -5'
12804 5' -55.6 NC_003387.1 + 29343 0.7 0.502469
Target:  5'- gCCGC-CGcgCGCuucaUCCUCGGCGACc -3'
miRNA:   3'- gGGUGaGCuaGCGc---AGGAGCUGCUGc -5'
12804 5' -55.6 NC_003387.1 + 2617 0.7 0.533257
Target:  5'- aCCAggCGcUCGCGggCCUCGGCGAUc -3'
miRNA:   3'- gGGUgaGCuAGCGCa-GGAGCUGCUGc -5'
12804 5' -55.6 NC_003387.1 + 52003 0.69 0.543673
Target:  5'- aCCUGCcCGAccugUCG-GcCCUCGACGACGa -3'
miRNA:   3'- -GGGUGaGCU----AGCgCaGGAGCUGCUGC- -5'
12804 5' -55.6 NC_003387.1 + 35956 0.69 0.543673
Target:  5'- gCCGCgaaggccgCGGUCGaggagGcCCUCGGCGGCGa -3'
miRNA:   3'- gGGUGa-------GCUAGCg----CaGGAGCUGCUGC- -5'
12804 5' -55.6 NC_003387.1 + 22147 0.69 0.543673
Target:  5'- cCCgCACUCGcggcacggCGCGUaCCggccgCGGCGGCGg -3'
miRNA:   3'- -GG-GUGAGCua------GCGCA-GGa----GCUGCUGC- -5'
12804 5' -55.6 NC_003387.1 + 20456 0.69 0.543673
Target:  5'- cCCCACgccuuGUCG-G-CCUCGGCGACGg -3'
miRNA:   3'- -GGGUGagc--UAGCgCaGGAGCUGCUGC- -5'
12804 5' -55.6 NC_003387.1 + 48312 0.69 0.564692
Target:  5'- gCCCAgCUCGGcgUCGaCGUUCugccaguagUCGACGGCGu -3'
miRNA:   3'- -GGGU-GAGCU--AGC-GCAGG---------AGCUGCUGC- -5'
12804 5' -55.6 NC_003387.1 + 45255 0.69 0.568923
Target:  5'- gCgGCUCGGugaucgccuggcccaUCGCGUUCUCGcCGACc -3'
miRNA:   3'- gGgUGAGCU---------------AGCGCAGGAGCuGCUGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.