miRNA display CGI


Results 21 - 40 of 93 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12804 5' -55.6 NC_003387.1 + 10750 0.67 0.682273
Target:  5'- aCCGCUgacacggccgCGAUCGcCGguacgagCCUCGACGAa- -3'
miRNA:   3'- gGGUGA----------GCUAGC-GCa------GGAGCUGCUgc -5'
12804 5' -55.6 NC_003387.1 + 10782 0.66 0.744874
Target:  5'- gCCUGCaUCG-UCGgGUCgUCGGCGuCGg -3'
miRNA:   3'- -GGGUG-AGCuAGCgCAGgAGCUGCuGC- -5'
12804 5' -55.6 NC_003387.1 + 11064 0.67 0.713919
Target:  5'- aCCACa-GGUCGCaGUCgUCGACGuACc -3'
miRNA:   3'- gGGUGagCUAGCG-CAGgAGCUGC-UGc -5'
12804 5' -55.6 NC_003387.1 + 11653 0.81 0.108008
Target:  5'- gCCC-CUCGAUCGCGUcgacagcggCCUCGGCGAUc -3'
miRNA:   3'- -GGGuGAGCUAGCGCA---------GGAGCUGCUGc -5'
12804 5' -55.6 NC_003387.1 + 11764 0.74 0.314913
Target:  5'- gCUCGgcCUCGAUCGCGUcgcgcaCCUUGGCGACc -3'
miRNA:   3'- -GGGU--GAGCUAGCGCA------GGAGCUGCUGc -5'
12804 5' -55.6 NC_003387.1 + 12428 0.68 0.607294
Target:  5'- -gCGCUUGccGUCGuCGUCCUCGAuCGAgGg -3'
miRNA:   3'- ggGUGAGC--UAGC-GCAGGAGCU-GCUgC- -5'
12804 5' -55.6 NC_003387.1 + 13606 0.72 0.406305
Target:  5'- aCCGCUaCGGUCGUGcaCCUCGAUGAa- -3'
miRNA:   3'- gGGUGA-GCUAGCGCa-GGAGCUGCUgc -5'
12804 5' -55.6 NC_003387.1 + 14373 0.66 0.75499
Target:  5'- gCUugUCGAggGCcUCgUCGACGACc -3'
miRNA:   3'- gGGugAGCUagCGcAGgAGCUGCUGc -5'
12804 5' -55.6 NC_003387.1 + 16082 0.67 0.67162
Target:  5'- gCCACUCGGggGCGcCgUCGggcaucGCGGCGg -3'
miRNA:   3'- gGGUGAGCUagCGCaGgAGC------UGCUGC- -5'
12804 5' -55.6 NC_003387.1 + 16727 0.69 0.596593
Target:  5'- cCUCGCcgUCGAUCGUGcCCUCGuCGuCGc -3'
miRNA:   3'- -GGGUG--AGCUAGCGCaGGAGCuGCuGC- -5'
12804 5' -55.6 NC_003387.1 + 16755 0.67 0.682273
Target:  5'- gCCGC-CGAggGCcUCCUCGACcGCGg -3'
miRNA:   3'- gGGUGaGCUagCGcAGGAGCUGcUGC- -5'
12804 5' -55.6 NC_003387.1 + 17229 0.66 0.740797
Target:  5'- aCCGCUCGAcgagcgcacgccgUgGCGugucgaaacgucgaUCCaguUCGACGACGa -3'
miRNA:   3'- gGGUGAGCU-------------AgCGC--------------AGG---AGCUGCUGC- -5'
12804 5' -55.6 NC_003387.1 + 18180 0.77 0.211085
Target:  5'- aCCCGCUgaCGAUCggcugcgagguGCG-CCUCGGCGACGc -3'
miRNA:   3'- -GGGUGA--GCUAG-----------CGCaGGAGCUGCUGC- -5'
12804 5' -55.6 NC_003387.1 + 19235 0.75 0.258777
Target:  5'- aUCACgCGAUCGCGggcgccgaccgCCUCGGCGACu -3'
miRNA:   3'- gGGUGaGCUAGCGCa----------GGAGCUGCUGc -5'
12804 5' -55.6 NC_003387.1 + 19830 0.68 0.639486
Target:  5'- aCCCGCg-GGUCGaaucaaUCuCUCGACGACGc -3'
miRNA:   3'- -GGGUGagCUAGCgc----AG-GAGCUGCUGC- -5'
12804 5' -55.6 NC_003387.1 + 20456 0.69 0.543673
Target:  5'- cCCCACgccuuGUCG-G-CCUCGGCGACGg -3'
miRNA:   3'- -GGGUGagc--UAGCgCaGGAGCUGCUGC- -5'
12804 5' -55.6 NC_003387.1 + 20815 0.73 0.345449
Target:  5'- aCCGCUCGGagcaggggauacgUCGCGcgaCgUCGGCGACGg -3'
miRNA:   3'- gGGUGAGCU-------------AGCGCa--GgAGCUGCUGC- -5'
12804 5' -55.6 NC_003387.1 + 21915 0.66 0.73465
Target:  5'- gCCGCUUcAUCGacauugugGUgCUCGGCGGCGg -3'
miRNA:   3'- gGGUGAGcUAGCg-------CAgGAGCUGCUGC- -5'
12804 5' -55.6 NC_003387.1 + 22147 0.69 0.543673
Target:  5'- cCCgCACUCGcggcacggCGCGUaCCggccgCGGCGGCGg -3'
miRNA:   3'- -GG-GUGAGCua------GCGCA-GGa----GCUGCUGC- -5'
12804 5' -55.6 NC_003387.1 + 22451 0.67 0.713919
Target:  5'- gCCGCggCGuuggccUCGCGguaCUCGACGACc -3'
miRNA:   3'- gGGUGa-GCu-----AGCGCag-GAGCUGCUGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.