miRNA display CGI


Results 1 - 20 of 93 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12804 5' -55.6 NC_003387.1 + 530 0.67 0.703433
Target:  5'- gCCUGCUCGAcaGCGUCCugcUCGAccugcuCGACa -3'
miRNA:   3'- -GGGUGAGCUagCGCAGG---AGCU------GCUGc -5'
12804 5' -55.6 NC_003387.1 + 818 0.66 0.744874
Target:  5'- gCCAgCUCGGgcagcaccUCGaCGagcUUCUCGGCGACGg -3'
miRNA:   3'- gGGU-GAGCU--------AGC-GC---AGGAGCUGCUGC- -5'
12804 5' -55.6 NC_003387.1 + 1447 0.67 0.692881
Target:  5'- --gGCUCGGggUCGuCGUCCUCGuCGAgGu -3'
miRNA:   3'- gggUGAGCU--AGC-GCAGGAGCuGCUgC- -5'
12804 5' -55.6 NC_003387.1 + 1809 0.68 0.607294
Target:  5'- uUCCGCaUGAUCGUGaccaugcCCUCGACGuCGa -3'
miRNA:   3'- -GGGUGaGCUAGCGCa------GGAGCUGCuGC- -5'
12804 5' -55.6 NC_003387.1 + 2072 0.66 0.73465
Target:  5'- gUCUGCgCGA-CGCgGUCCUCGGCGGUGa -3'
miRNA:   3'- -GGGUGaGCUaGCG-CAGGAGCUGCUGC- -5'
12804 5' -55.6 NC_003387.1 + 2275 0.71 0.456862
Target:  5'- gUCgGCUCGA-CGuCGUCCUCGcuggcguacgccgagGCGACGa -3'
miRNA:   3'- -GGgUGAGCUaGC-GCAGGAGC---------------UGCUGC- -5'
12804 5' -55.6 NC_003387.1 + 2617 0.7 0.533257
Target:  5'- aCCAggCGcUCGCGggCCUCGGCGAUc -3'
miRNA:   3'- gGGUgaGCuAGCGCa-GGAGCUGCUGc -5'
12804 5' -55.6 NC_003387.1 + 3343 0.79 0.15801
Target:  5'- gCCCGCUCGuuuggCGCgGUCgUCGACGGCa -3'
miRNA:   3'- -GGGUGAGCua---GCG-CAGgAGCUGCUGc -5'
12804 5' -55.6 NC_003387.1 + 3497 0.66 0.774852
Target:  5'- gCCGCUCGG-C-CG-CCUCGAcCGGCa -3'
miRNA:   3'- gGGUGAGCUaGcGCaGGAGCU-GCUGc -5'
12804 5' -55.6 NC_003387.1 + 3741 0.68 0.607294
Target:  5'- aCCugUCGG-CGuCGUCCaagcUGACGACGc -3'
miRNA:   3'- gGGugAGCUaGC-GCAGGa---GCUGCUGC- -5'
12804 5' -55.6 NC_003387.1 + 4563 0.66 0.774852
Target:  5'- gCCUGCgCGAccgCGCGggCCUCGGUGGCGc -3'
miRNA:   3'- -GGGUGaGCUa--GCGCa-GGAGCUGCUGC- -5'
12804 5' -55.6 NC_003387.1 + 5088 0.68 0.607294
Target:  5'- gCCCGCUa-GUCGCGggCCaUGugGGCGa -3'
miRNA:   3'- -GGGUGAgcUAGCGCa-GGaGCugCUGC- -5'
12804 5' -55.6 NC_003387.1 + 6355 0.71 0.443425
Target:  5'- gCCCAC-CGuGUCGCGcuuggCCUCGGCcGCGg -3'
miRNA:   3'- -GGGUGaGC-UAGCGCa----GGAGCUGcUGC- -5'
12804 5' -55.6 NC_003387.1 + 6662 0.8 0.134423
Target:  5'- aCCCGCUCaagCGCGgugcgcugcagaUCCUCGACGACGc -3'
miRNA:   3'- -GGGUGAGcuaGCGC------------AGGAGCUGCUGC- -5'
12804 5' -55.6 NC_003387.1 + 7554 0.67 0.707636
Target:  5'- gCCCugGC-CGAUCGCGUCaucacugaguacaCGAUGGCGa -3'
miRNA:   3'- -GGG--UGaGCUAGCGCAGga-----------GCUGCUGC- -5'
12804 5' -55.6 NC_003387.1 + 8805 0.68 0.638413
Target:  5'- uCCCGCUCaGcUCGCGcCCgaacuuggccguaUCGACGAgCGg -3'
miRNA:   3'- -GGGUGAG-CuAGCGCaGG-------------AGCUGCU-GC- -5'
12804 5' -55.6 NC_003387.1 + 9046 0.75 0.258777
Target:  5'- aUCCACgccagGAUCGCGucgcccUCCUCGGCGACu -3'
miRNA:   3'- -GGGUGag---CUAGCGC------AGGAGCUGCUGc -5'
12804 5' -55.6 NC_003387.1 + 9789 0.68 0.650216
Target:  5'- uCUgGCg-GGUCGCGcUUUCGACGACGg -3'
miRNA:   3'- -GGgUGagCUAGCGCaGGAGCUGCUGC- -5'
12804 5' -55.6 NC_003387.1 + 10263 0.68 0.654504
Target:  5'- gCCCGgUUGGUCGCGgcgCaCUCGGCcuugaaccgcucgguGACGa -3'
miRNA:   3'- -GGGUgAGCUAGCGCa--G-GAGCUG---------------CUGC- -5'
12804 5' -55.6 NC_003387.1 + 10556 0.72 0.406305
Target:  5'- -gCGCUCGGUCaGC-UCCUCGAuCGACa -3'
miRNA:   3'- ggGUGAGCUAG-CGcAGGAGCU-GCUGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.