miRNA display CGI


Results 1 - 20 of 93 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12804 5' -55.6 NC_003387.1 + 3343 0.79 0.15801
Target:  5'- gCCCGCUCGuuuggCGCgGUCgUCGACGGCa -3'
miRNA:   3'- -GGGUGAGCua---GCG-CAGgAGCUGCUGc -5'
12804 5' -55.6 NC_003387.1 + 19830 0.68 0.639486
Target:  5'- aCCCGCg-GGUCGaaucaaUCuCUCGACGACGc -3'
miRNA:   3'- -GGGUGagCUAGCgc----AG-GAGCUGCUGC- -5'
12804 5' -55.6 NC_003387.1 + 47848 0.67 0.670552
Target:  5'- gCCugUCGAaacCGCuuauggcgcagcgGUCCUaCGACGACa -3'
miRNA:   3'- gGGugAGCUa--GCG-------------CAGGA-GCUGCUGc -5'
12804 5' -55.6 NC_003387.1 + 36716 0.66 0.774852
Target:  5'- aCCCGgUCGAgcugCcCGgCCUCGACGcCGu -3'
miRNA:   3'- -GGGUgAGCUa---GcGCaGGAGCUGCuGC- -5'
12804 5' -55.6 NC_003387.1 + 25779 0.73 0.351969
Target:  5'- aCCCGCUCGAcauucucggccugcUCgGCGgCCUCGGUGGCGg -3'
miRNA:   3'- -GGGUGAGCU--------------AG-CGCaGGAGCUGCUGC- -5'
12804 5' -55.6 NC_003387.1 + 28824 0.73 0.379778
Target:  5'- gCCACcaagaCGAUCGUGUgCUCGcCGACGu -3'
miRNA:   3'- gGGUGa----GCUAGCGCAgGAGCuGCUGC- -5'
12804 5' -55.6 NC_003387.1 + 29439 0.71 0.433965
Target:  5'- gCCCGCgCGGUCGCuaUCCUCGcgaucgagaACGGCGc -3'
miRNA:   3'- -GGGUGaGCUAGCGc-AGGAGC---------UGCUGC- -5'
12804 5' -55.6 NC_003387.1 + 33222 0.71 0.443425
Target:  5'- gCCCGCUCGGcgaUgGcCGUCaagacguacgugCUCGACGACGu -3'
miRNA:   3'- -GGGUGAGCU---AgC-GCAG------------GAGCUGCUGC- -5'
12804 5' -55.6 NC_003387.1 + 35956 0.69 0.543673
Target:  5'- gCCGCgaaggccgCGGUCGaggagGcCCUCGGCGGCGa -3'
miRNA:   3'- gGGUGa-------GCUAGCg----CaGGAGCUGCUGC- -5'
12804 5' -55.6 NC_003387.1 + 44780 0.68 0.637339
Target:  5'- gCCCGacCUCGAcaagcuggcccgCGCGaUCCUCGACGGg- -3'
miRNA:   3'- -GGGU--GAGCUa-----------GCGC-AGGAGCUGCUgc -5'
12804 5' -55.6 NC_003387.1 + 41019 0.68 0.607294
Target:  5'- gCCgGgUCGAcUGCGUCgaCGGCGACa -3'
miRNA:   3'- -GGgUgAGCUaGCGCAGgaGCUGCUGc -5'
12804 5' -55.6 NC_003387.1 + 29343 0.7 0.502469
Target:  5'- gCCGC-CGcgCGCuucaUCCUCGGCGACc -3'
miRNA:   3'- gGGUGaGCuaGCGc---AGGAGCUGCUGc -5'
12804 5' -55.6 NC_003387.1 + 18180 0.77 0.211085
Target:  5'- aCCCGCUgaCGAUCggcugcgagguGCG-CCUCGGCGACGc -3'
miRNA:   3'- -GGGUGA--GCUAG-----------CGCaGGAGCUGCUGC- -5'
12804 5' -55.6 NC_003387.1 + 3741 0.68 0.607294
Target:  5'- aCCugUCGG-CGuCGUCCaagcUGACGACGc -3'
miRNA:   3'- gGGugAGCUaGC-GCAGGa---GCUGCUGC- -5'
12804 5' -55.6 NC_003387.1 + 51739 0.76 0.222249
Target:  5'- cCCCGgUCGA--GCG-CCUCGGCGGCGg -3'
miRNA:   3'- -GGGUgAGCUagCGCaGGAGCUGCUGC- -5'
12804 5' -55.6 NC_003387.1 + 48822 0.71 0.443425
Target:  5'- uCCCGC-CGGUCGUGcUgCUCGgcGCGACGc -3'
miRNA:   3'- -GGGUGaGCUAGCGC-AgGAGC--UGCUGC- -5'
12804 5' -55.6 NC_003387.1 + 48227 0.68 0.62875
Target:  5'- aCCCGCaCGAUCGUGUCgCgcccggUCGGCcGCGg -3'
miRNA:   3'- -GGGUGaGCUAGCGCAG-G------AGCUGcUGC- -5'
12804 5' -55.6 NC_003387.1 + 9789 0.68 0.650216
Target:  5'- uCUgGCg-GGUCGCGcUUUCGACGACGg -3'
miRNA:   3'- -GGgUGagCUAGCGCaGGAGCUGCUGC- -5'
12804 5' -55.6 NC_003387.1 + 52713 0.75 0.258777
Target:  5'- cCCCGCgaaCGAUCGCGgcgccCCUCG-CGGCa -3'
miRNA:   3'- -GGGUGa--GCUAGCGCa----GGAGCuGCUGc -5'
12804 5' -55.6 NC_003387.1 + 34546 0.72 0.397334
Target:  5'- aCCCGCUCGAcgacgUCGUGUauaucgCCgggcCGAUGACGg -3'
miRNA:   3'- -GGGUGAGCU-----AGCGCA------GGa---GCUGCUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.