miRNA display CGI


Results 21 - 40 of 67 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12805 5' -58 NC_003387.1 + 37105 0.73 0.223435
Target:  5'- gCGCGCCcucgacgUGCUCgacGUCGGcCGGGCc -3'
miRNA:   3'- gGUGCGGa------ACGGGaa-CAGCCaGCCCG- -5'
12805 5' -58 NC_003387.1 + 50918 0.68 0.453836
Target:  5'- gCCGCGCCggucagcuucaccUUGaCCUUG-CGGgcuuucagcUCGGGCg -3'
miRNA:   3'- -GGUGCGG-------------AACgGGAACaGCC---------AGCCCG- -5'
12805 5' -58 NC_003387.1 + 7506 0.68 0.435735
Target:  5'- aCCACGCCacgaucgGCCgCggGUCGaaCGGGCc -3'
miRNA:   3'- -GGUGCGGaa-----CGG-GaaCAGCcaGCCCG- -5'
12805 5' -58 NC_003387.1 + 23465 0.73 0.241185
Target:  5'- gCCAuCGCCUcguacUGCucgaCCUUGUCGGcCGGGa -3'
miRNA:   3'- -GGU-GCGGA-----ACG----GGAACAGCCaGCCCg -5'
12805 5' -58 NC_003387.1 + 48083 0.69 0.426377
Target:  5'- gCCGgGCCUUGUCCUUaUCGGcCuuGGCc -3'
miRNA:   3'- -GGUgCGGAACGGGAAcAGCCaGc-CCG- -5'
12805 5' -58 NC_003387.1 + 33422 0.68 0.458667
Target:  5'- gUCACGCCgagcuggaucgggcUGCCCgaggCGGUCaGGCc -3'
miRNA:   3'- -GGUGCGGa-------------ACGGGaacaGCCAGcCCG- -5'
12805 5' -58 NC_003387.1 + 22995 0.68 0.464501
Target:  5'- cCCGCGUagcUGCCgUcGUCGGcCuGGGCg -3'
miRNA:   3'- -GGUGCGga-ACGGgAaCAGCCaG-CCCG- -5'
12805 5' -58 NC_003387.1 + 47420 0.68 0.474308
Target:  5'- uCCACGCUcacccGCCCa----GGUUGGGCg -3'
miRNA:   3'- -GGUGCGGaa---CGGGaacagCCAGCCCG- -5'
12805 5' -58 NC_003387.1 + 30182 0.66 0.592078
Target:  5'- aCCGCGUCgagccaGCCCUcggccugggccaggGUCGcGgCGGGCa -3'
miRNA:   3'- -GGUGCGGaa----CGGGAa-------------CAGC-CaGCCCG- -5'
12805 5' -58 NC_003387.1 + 945 0.66 0.587814
Target:  5'- uCgACGCCcaGCCaccaGUCGGgCGGGUa -3'
miRNA:   3'- -GgUGCGGaaCGGgaa-CAGCCaGCCCG- -5'
12805 5' -58 NC_003387.1 + 23414 0.66 0.566585
Target:  5'- gCCugGCgCUcgUGCCCg---CGGUCgccggggaacaGGGCg -3'
miRNA:   3'- -GGugCG-GA--ACGGGaacaGCCAG-----------CCCG- -5'
12805 5' -58 NC_003387.1 + 1596 0.66 0.556043
Target:  5'- aCGCGCCcUGgCa-UGuUCGGcCGGGCg -3'
miRNA:   3'- gGUGCGGaACgGgaAC-AGCCaGCCCG- -5'
12805 5' -58 NC_003387.1 + 44427 0.66 0.556043
Target:  5'- gCCGCGCCggUGaUCCacacGUCGcccUCGGGCg -3'
miRNA:   3'- -GGUGCGGa-AC-GGGaa--CAGCc--AGCCCG- -5'
12805 5' -58 NC_003387.1 + 35164 0.66 0.556043
Target:  5'- -gGCGUUgucGCCCUUGUCacccuUCGGGCc -3'
miRNA:   3'- ggUGCGGaa-CGGGAACAGcc---AGCCCG- -5'
12805 5' -58 NC_003387.1 + 39468 0.67 0.549745
Target:  5'- ---gGCCUUGCCCUuggugcgcagaucgcUGUCGGccugcUCGGcGUc -3'
miRNA:   3'- ggugCGGAACGGGA---------------ACAGCC-----AGCC-CG- -5'
12805 5' -58 NC_003387.1 + 46904 0.67 0.524789
Target:  5'- gCCcCGCCUUGCgCgggGUugcgcuucggUGGUgCGGGCg -3'
miRNA:   3'- -GGuGCGGAACGgGaa-CA----------GCCA-GCCCG- -5'
12805 5' -58 NC_003387.1 + 38716 0.67 0.524789
Target:  5'- gUACGCCggguUGCCCUgccagucauUCGGauacUUGGGCg -3'
miRNA:   3'- gGUGCGGa---ACGGGAac-------AGCC----AGCCCG- -5'
12805 5' -58 NC_003387.1 + 18968 0.67 0.511451
Target:  5'- gCgGCGCCgccgUUGCCCUUGcCGGggugccgcuuagacgGGGCc -3'
miRNA:   3'- -GgUGCGG----AACGGGAACaGCCag-------------CCCG- -5'
12805 5' -58 NC_003387.1 + 30235 0.67 0.491214
Target:  5'- uUCGCGCCagUUGgCCgggucGUCGGggucggcgccggggUCGGGCa -3'
miRNA:   3'- -GGUGCGG--AACgGGaa---CAGCC--------------AGCCCG- -5'
12805 5' -58 NC_003387.1 + 20457 0.68 0.482228
Target:  5'- cCCACGCCUUGUcggCCUcGgcgacggccaggCGGUCGGccaGCu -3'
miRNA:   3'- -GGUGCGGAACG---GGAaCa-----------GCCAGCC---CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.