miRNA display CGI


Results 1 - 20 of 67 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12805 5' -58 NC_003387.1 + 45276 0.76 0.154732
Target:  5'- gCCACGCCga-CCCc-GUCGGgCGGGCa -3'
miRNA:   3'- -GGUGCGGaacGGGaaCAGCCaGCCCG- -5'
12805 5' -58 NC_003387.1 + 39154 0.66 0.577178
Target:  5'- uCCGCGCCgaggGCg--UGUacUGGUCGGuGCg -3'
miRNA:   3'- -GGUGCGGaa--CGggaACA--GCCAGCC-CG- -5'
12805 5' -58 NC_003387.1 + 22959 0.66 0.598485
Target:  5'- aCCGCGUggggcGCCCcgGUCaucguGUCGGGCg -3'
miRNA:   3'- -GGUGCGgaa--CGGGaaCAGc----CAGCCCG- -5'
12805 5' -58 NC_003387.1 + 12271 0.66 0.609183
Target:  5'- cCCGCGCCUgGCgaCCggcgGcCGGaucagCGGGCc -3'
miRNA:   3'- -GGUGCGGAaCG--GGaa--CaGCCa----GCCCG- -5'
12805 5' -58 NC_003387.1 + 24951 0.69 0.399036
Target:  5'- gC-CGCCUgaugGCCUggGUCGGUUGGcaGCu -3'
miRNA:   3'- gGuGCGGAa---CGGGaaCAGCCAGCC--CG- -5'
12805 5' -58 NC_003387.1 + 15956 0.69 0.426377
Target:  5'- cUCGCGCCUgcaUGUgCUUG-CGGuggaggacaauUCGGGCc -3'
miRNA:   3'- -GGUGCGGA---ACGgGAACaGCC-----------AGCCCG- -5'
12805 5' -58 NC_003387.1 + 37379 0.68 0.454801
Target:  5'- -gGCGgCggcGCCCcgcUGUCGGuaUCGGGCa -3'
miRNA:   3'- ggUGCgGaa-CGGGa--ACAGCC--AGCCCG- -5'
12805 5' -58 NC_003387.1 + 42760 0.68 0.474308
Target:  5'- gCUGCGCUggUGCCC----CGaGUCGGGCa -3'
miRNA:   3'- -GGUGCGGa-ACGGGaacaGC-CAGCCCG- -5'
12805 5' -58 NC_003387.1 + 45653 0.67 0.52479
Target:  5'- gC-CGCCUgGCgCCgaaggUGUcCGGUCaGGGCg -3'
miRNA:   3'- gGuGCGGAaCG-GGa----ACA-GCCAG-CCCG- -5'
12805 5' -58 NC_003387.1 + 43235 0.66 0.556044
Target:  5'- aCCACGUgUUGCCgUuccUGuUCGGcgcCGGGUc -3'
miRNA:   3'- -GGUGCGgAACGGgA---AC-AGCCa--GCCCG- -5'
12805 5' -58 NC_003387.1 + 8073 0.67 0.535139
Target:  5'- cCCGCGCUaa-CCCgcUGcCGGUCGGcGCc -3'
miRNA:   3'- -GGUGCGGaacGGGa-ACaGCCAGCC-CG- -5'
12805 5' -58 NC_003387.1 + 48151 0.67 0.504328
Target:  5'- gCGCGCCaccgagGCCCgcg-CGGUCGcgcaGGCg -3'
miRNA:   3'- gGUGCGGaa----CGGGaacaGCCAGC----CCG- -5'
12805 5' -58 NC_003387.1 + 37105 0.73 0.223435
Target:  5'- gCGCGCCcucgacgUGCUCgacGUCGGcCGGGCc -3'
miRNA:   3'- gGUGCGGa------ACGGGaa-CAGCCaGCCCG- -5'
12805 5' -58 NC_003387.1 + 25463 0.67 0.535139
Target:  5'- cCCGCGUCgcgGCUCaUG-CGGcgcauccugUCGGGCg -3'
miRNA:   3'- -GGUGCGGaa-CGGGaACaGCC---------AGCCCG- -5'
12805 5' -58 NC_003387.1 + 21472 0.71 0.316411
Target:  5'- -gGCGCa--GCCCgcGcCGGUCGGGCc -3'
miRNA:   3'- ggUGCGgaaCGGGaaCaGCCAGCCCG- -5'
12805 5' -58 NC_003387.1 + 31947 0.68 0.47826
Target:  5'- uCCGCGCCggucgcauccccgGCCgCaagGUCGGUCGucacuGGCg -3'
miRNA:   3'- -GGUGCGGaa-----------CGG-Gaa-CAGCCAGC-----CCG- -5'
12805 5' -58 NC_003387.1 + 11590 0.66 0.556044
Target:  5'- aCgGCGUCgcgaugGCCg-UGU-GGUCGGGCa -3'
miRNA:   3'- -GgUGCGGaa----CGGgaACAgCCAGCCCG- -5'
12805 5' -58 NC_003387.1 + 1577 0.66 0.598485
Target:  5'- -aGCGCCUaacGCCCUgg-CGGUCGacaugucgcacGGCc -3'
miRNA:   3'- ggUGCGGAa--CGGGAacaGCCAGC-----------CCG- -5'
12805 5' -58 NC_003387.1 + 39205 0.7 0.356042
Target:  5'- aCCAgGCC---CCCg---CGGUCGGGCa -3'
miRNA:   3'- -GGUgCGGaacGGGaacaGCCAGCCCG- -5'
12805 5' -58 NC_003387.1 + 28298 0.68 0.435735
Target:  5'- gCACGCCUggGCaCCcc-UCGGUaucgCGGGCg -3'
miRNA:   3'- gGUGCGGAa-CG-GGaacAGCCA----GCCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.