miRNA display CGI


Results 1 - 20 of 67 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12805 5' -58 NC_003387.1 + 694 0.66 0.605971
Target:  5'- aCGCaggGCCUUGaucgCCUcGUCgucgagggccgacaGGUCGGGCa -3'
miRNA:   3'- gGUG---CGGAACg---GGAaCAG--------------CCAGCCCG- -5'
12805 5' -58 NC_003387.1 + 945 0.66 0.587814
Target:  5'- uCgACGCCcaGCCaccaGUCGGgCGGGUa -3'
miRNA:   3'- -GgUGCGGaaCGGgaa-CAGCCaGCCCG- -5'
12805 5' -58 NC_003387.1 + 1577 0.66 0.598485
Target:  5'- -aGCGCCUaacGCCCUgg-CGGUCGacaugucgcacGGCc -3'
miRNA:   3'- ggUGCGGAa--CGGGAacaGCCAGC-----------CCG- -5'
12805 5' -58 NC_003387.1 + 1596 0.66 0.556043
Target:  5'- aCGCGCCcUGgCa-UGuUCGGcCGGGCg -3'
miRNA:   3'- gGUGCGGaACgGgaAC-AGCCaGCCCG- -5'
12805 5' -58 NC_003387.1 + 5688 0.71 0.331853
Target:  5'- gCCACGCCUcaUGCCC-----GGcCGGGCc -3'
miRNA:   3'- -GGUGCGGA--ACGGGaacagCCaGCCCG- -5'
12805 5' -58 NC_003387.1 + 6346 0.67 0.545559
Target:  5'- aCACGCUgcGCCCaccgugucgcgcUUGgccUCGGccgCGGGCg -3'
miRNA:   3'- gGUGCGGaaCGGG------------AAC---AGCCa--GCCCG- -5'
12805 5' -58 NC_003387.1 + 6766 0.79 0.092067
Target:  5'- gCACGCCUcGCCCUUgcgcgggccGUCGGcgaacacgcUCGGGCa -3'
miRNA:   3'- gGUGCGGAaCGGGAA---------CAGCC---------AGCCCG- -5'
12805 5' -58 NC_003387.1 + 7506 0.68 0.435735
Target:  5'- aCCACGCCacgaucgGCCgCggGUCGaaCGGGCc -3'
miRNA:   3'- -GGUGCGGaa-----CGG-GaaCAGCcaGCCCG- -5'
12805 5' -58 NC_003387.1 + 7938 0.73 0.247358
Target:  5'- aUCGCGCgg-GCCagCUUGUCgaGGUCGGGCc -3'
miRNA:   3'- -GGUGCGgaaCGG--GAACAG--CCAGCCCG- -5'
12805 5' -58 NC_003387.1 + 8073 0.67 0.535139
Target:  5'- cCCGCGCUaa-CCCgcUGcCGGUCGGcGCc -3'
miRNA:   3'- -GGUGCGGaacGGGa-ACaGCCAGCC-CG- -5'
12805 5' -58 NC_003387.1 + 8285 0.69 0.399035
Target:  5'- -aGCGCCUcGUgCgcGUCGG-CGGGCa -3'
miRNA:   3'- ggUGCGGAaCGgGaaCAGCCaGCCCG- -5'
12805 5' -58 NC_003387.1 + 10249 0.7 0.347843
Target:  5'- cCCACGgCgggaucGCCCg-GUUGGUCGcGGCg -3'
miRNA:   3'- -GGUGCgGaa----CGGGaaCAGCCAGC-CCG- -5'
12805 5' -58 NC_003387.1 + 11590 0.66 0.556044
Target:  5'- aCgGCGUCgcgaugGCCg-UGU-GGUCGGGCa -3'
miRNA:   3'- -GgUGCGGaa----CGGgaACAgCCAGCCCG- -5'
12805 5' -58 NC_003387.1 + 12271 0.66 0.609183
Target:  5'- cCCGCGCCUgGCgaCCggcgGcCGGaucagCGGGCc -3'
miRNA:   3'- -GGUGCGGAaCG--GGaa--CaGCCa----GCCCG- -5'
12805 5' -58 NC_003387.1 + 13076 0.66 0.609183
Target:  5'- cCCACGCCaUGCgCgacaccgGGUCGaGGCu -3'
miRNA:   3'- -GGUGCGGaACGgGaacag--CCAGC-CCG- -5'
12805 5' -58 NC_003387.1 + 13413 0.77 0.13523
Target:  5'- gCACGCCcucGCCgUUGUCGGcCGGGg -3'
miRNA:   3'- gGUGCGGaa-CGGgAACAGCCaGCCCg -5'
12805 5' -58 NC_003387.1 + 15956 0.69 0.426377
Target:  5'- cUCGCGCCUgcaUGUgCUUG-CGGuggaggacaauUCGGGCc -3'
miRNA:   3'- -GGUGCGGA---ACGgGAACaGCC-----------AGCCCG- -5'
12805 5' -58 NC_003387.1 + 18021 0.66 0.585683
Target:  5'- gUCGCGCCgcauguaccagGCCCacggcgUGUUuuucGUCGGGCu -3'
miRNA:   3'- -GGUGCGGaa---------CGGGa-----ACAGc---CAGCCCG- -5'
12805 5' -58 NC_003387.1 + 18338 0.67 0.545559
Target:  5'- gUCGCGCCguuuCCgUUGUCGccGUUGGGUu -3'
miRNA:   3'- -GGUGCGGaac-GGgAACAGC--CAGCCCG- -5'
12805 5' -58 NC_003387.1 + 18771 0.67 0.545559
Target:  5'- gUCGCGUgUcgacUGCCCuUUGUCGGggaaccacagcUCGGGg -3'
miRNA:   3'- -GGUGCGgA----ACGGG-AACAGCC-----------AGCCCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.