miRNA display CGI


Results 1 - 20 of 67 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12805 5' -58 NC_003387.1 + 35067 1.12 0.000337
Target:  5'- aCCACGCCUUGCCCUUGUCGGUCGGGCc -3'
miRNA:   3'- -GGUGCGGAACGGGAACAGCCAGCCCG- -5'
12805 5' -58 NC_003387.1 + 6766 0.79 0.092067
Target:  5'- gCACGCCUcGCCCUUgcgcgggccGUCGGcgaacacgcUCGGGCa -3'
miRNA:   3'- gGUGCGGAaCGGGAA---------CAGCC---------AGCCCG- -5'
12805 5' -58 NC_003387.1 + 13413 0.77 0.13523
Target:  5'- gCACGCCcucGCCgUUGUCGGcCGGGg -3'
miRNA:   3'- gGUGCGGaa-CGGgAACAGCCaGCCCg -5'
12805 5' -58 NC_003387.1 + 38087 0.76 0.142744
Target:  5'- cCCucgGCCUUGCCCUUcgcguacacGUCGGcCGGGUu -3'
miRNA:   3'- -GGug-CGGAACGGGAA---------CAGCCaGCCCG- -5'
12805 5' -58 NC_003387.1 + 45276 0.76 0.154732
Target:  5'- gCCACGCCga-CCCc-GUCGGgCGGGCa -3'
miRNA:   3'- -GGUGCGGaacGGGaaCAGCCaGCCCG- -5'
12805 5' -58 NC_003387.1 + 27778 0.73 0.223435
Target:  5'- cCCAgGCCaucaggcgGCCCcgccGUCGGUCGcGGCg -3'
miRNA:   3'- -GGUgCGGaa------CGGGaa--CAGCCAGC-CCG- -5'
12805 5' -58 NC_003387.1 + 37105 0.73 0.223435
Target:  5'- gCGCGCCcucgacgUGCUCgacGUCGGcCGGGCc -3'
miRNA:   3'- gGUGCGGa------ACGGGaa-CAGCCaGCCCG- -5'
12805 5' -58 NC_003387.1 + 23465 0.73 0.241185
Target:  5'- gCCAuCGCCUcguacUGCucgaCCUUGUCGGcCGGGa -3'
miRNA:   3'- -GGU-GCGGA-----ACG----GGAACAGCCaGCCCg -5'
12805 5' -58 NC_003387.1 + 7938 0.73 0.247358
Target:  5'- aUCGCGCgg-GCCagCUUGUCgaGGUCGGGCc -3'
miRNA:   3'- -GGUGCGgaaCGG--GAACAG--CCAGCCCG- -5'
12805 5' -58 NC_003387.1 + 34797 0.71 0.308895
Target:  5'- -gGCGCCUUGgUgUUGUCGuaGUCGGGg -3'
miRNA:   3'- ggUGCGGAACgGgAACAGC--CAGCCCg -5'
12805 5' -58 NC_003387.1 + 21472 0.71 0.316411
Target:  5'- -gGCGCa--GCCCgcGcCGGUCGGGCc -3'
miRNA:   3'- ggUGCGgaaCGGGaaCaGCCAGCCCG- -5'
12805 5' -58 NC_003387.1 + 39403 0.71 0.324064
Target:  5'- -aACGUCUUGCCCagGUCGcugccGUCGaGGCc -3'
miRNA:   3'- ggUGCGGAACGGGaaCAGC-----CAGC-CCG- -5'
12805 5' -58 NC_003387.1 + 5688 0.71 0.331853
Target:  5'- gCCACGCCUcaUGCCC-----GGcCGGGCc -3'
miRNA:   3'- -GGUGCGGA--ACGGGaacagCCaGCCCG- -5'
12805 5' -58 NC_003387.1 + 10249 0.7 0.347843
Target:  5'- cCCACGgCgggaucGCCCg-GUUGGUCGcGGCg -3'
miRNA:   3'- -GGUGCgGaa----CGGGaaCAGCCAGC-CCG- -5'
12805 5' -58 NC_003387.1 + 28777 0.7 0.347843
Target:  5'- cCCAUGUCgccgUGCCCgcgGUCGagccaGcCGGGCa -3'
miRNA:   3'- -GGUGCGGa---ACGGGaa-CAGC-----CaGCCCG- -5'
12805 5' -58 NC_003387.1 + 39205 0.7 0.356042
Target:  5'- aCCAgGCC---CCCg---CGGUCGGGCa -3'
miRNA:   3'- -GGUgCGGaacGGGaacaGCCAGCCCG- -5'
12805 5' -58 NC_003387.1 + 39153 0.69 0.390174
Target:  5'- gCCgACGUCcUGCCC--GUCGaUCGGGCu -3'
miRNA:   3'- -GG-UGCGGaACGGGaaCAGCcAGCCCG- -5'
12805 5' -58 NC_003387.1 + 8285 0.69 0.399035
Target:  5'- -aGCGCCUcGUgCgcGUCGG-CGGGCa -3'
miRNA:   3'- ggUGCGGAaCGgGaaCAGCCaGCCCG- -5'
12805 5' -58 NC_003387.1 + 24715 0.69 0.399035
Target:  5'- gCCGCGCUcgucggUGCCC---UCGaUCGGGCg -3'
miRNA:   3'- -GGUGCGGa-----ACGGGaacAGCcAGCCCG- -5'
12805 5' -58 NC_003387.1 + 24951 0.69 0.399036
Target:  5'- gC-CGCCUgaugGCCUggGUCGGUUGGcaGCu -3'
miRNA:   3'- gGuGCGGAa---CGGGaaCAGCCAGCC--CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.