miRNA display CGI


Results 41 - 60 of 91 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12806 3' -59 NC_003387.1 + 3931 0.67 0.441183
Target:  5'- cGCCCGGUGggcgcugcugcagaACGaccCGGUGgUCGCGCu -3'
miRNA:   3'- aCGGGCCAC--------------UGCau-GCCGCaGGUGCG- -5'
12806 3' -59 NC_003387.1 + 44639 0.68 0.434617
Target:  5'- gGCCCuGGccGCGgccuCGGCGaUCCugGCc -3'
miRNA:   3'- aCGGG-CCacUGCau--GCCGC-AGGugCG- -5'
12806 3' -59 NC_003387.1 + 25057 0.68 0.434617
Target:  5'- -cCCgCGGcUGACGgccaGCGGCGUCUAUGa -3'
miRNA:   3'- acGG-GCC-ACUGCa---UGCCGCAGGUGCg -5'
12806 3' -59 NC_003387.1 + 36904 0.68 0.425337
Target:  5'- cGCCuCGGUGACGcUGUGcGCGUagcCCAgCGCg -3'
miRNA:   3'- aCGG-GCCACUGC-AUGC-CGCA---GGU-GCG- -5'
12806 3' -59 NC_003387.1 + 8286 0.68 0.425337
Target:  5'- cGCCCGaGggcGACGUGuggaucacCGGCG-CgGCGCa -3'
miRNA:   3'- aCGGGC-Ca--CUGCAU--------GCCGCaGgUGCG- -5'
12806 3' -59 NC_003387.1 + 11849 0.68 0.425337
Target:  5'- cGCCUGG-GACaugaucGCGGCGggggCCAUGUg -3'
miRNA:   3'- aCGGGCCaCUGca----UGCCGCa---GGUGCG- -5'
12806 3' -59 NC_003387.1 + 47399 0.68 0.416176
Target:  5'- cGgCCGauuaGGCGUugGcCGUCCACGCu -3'
miRNA:   3'- aCgGGCca--CUGCAugCcGCAGGUGCG- -5'
12806 3' -59 NC_003387.1 + 49488 0.68 0.416176
Target:  5'- cGgCCGGUG-CGcccgccCGGCGUCgACGUg -3'
miRNA:   3'- aCgGGCCACuGCau----GCCGCAGgUGCG- -5'
12806 3' -59 NC_003387.1 + 1761 0.68 0.407136
Target:  5'- aGCCCGGcGGCGgcgcUGGCGcCCGaGCu -3'
miRNA:   3'- aCGGGCCaCUGCau--GCCGCaGGUgCG- -5'
12806 3' -59 NC_003387.1 + 43104 0.68 0.407136
Target:  5'- cGCCgGGUacgagcgcGACGgcGCGGCG-CCGCGg -3'
miRNA:   3'- aCGGgCCA--------CUGCa-UGCCGCaGGUGCg -5'
12806 3' -59 NC_003387.1 + 4925 0.68 0.407136
Target:  5'- cUGCCCGGc-----GCGGCGUCgCGCGUu -3'
miRNA:   3'- -ACGGGCCacugcaUGCCGCAG-GUGCG- -5'
12806 3' -59 NC_003387.1 + 15971 0.68 0.399107
Target:  5'- cGCUgaCGGUGACGcccaggcgcucgcagACGGCGUCgAgGCc -3'
miRNA:   3'- aCGG--GCCACUGCa--------------UGCCGCAGgUgCG- -5'
12806 3' -59 NC_003387.1 + 34704 0.68 0.398221
Target:  5'- gGCCUGGU-ACaUGCGGCGcgaCCugGCc -3'
miRNA:   3'- aCGGGCCAcUGcAUGCCGCa--GGugCG- -5'
12806 3' -59 NC_003387.1 + 40541 0.68 0.398221
Target:  5'- cUGCCCGaG-GGCGUGacccccgaGGCGUUCgagGCGCu -3'
miRNA:   3'- -ACGGGC-CaCUGCAUg-------CCGCAGG---UGCG- -5'
12806 3' -59 NC_003387.1 + 2511 0.69 0.38077
Target:  5'- aGUCCaGGUGACGcGCGGgucgucguugcCGUCCcggucGCGCa -3'
miRNA:   3'- aCGGG-CCACUGCaUGCC-----------GCAGG-----UGCG- -5'
12806 3' -59 NC_003387.1 + 33249 0.69 0.372239
Target:  5'- cGCCCgcGGUGGCcu-CGGCGcCCACa- -3'
miRNA:   3'- aCGGG--CCACUGcauGCCGCaGGUGcg -5'
12806 3' -59 NC_003387.1 + 10401 0.69 0.363839
Target:  5'- cGCUCGGUGAUcUGCucgucGCG-CCACGCc -3'
miRNA:   3'- aCGGGCCACUGcAUGc----CGCaGGUGCG- -5'
12806 3' -59 NC_003387.1 + 10638 0.69 0.363006
Target:  5'- cGCggCGGUGAaggGUACGGCGUUCggccucgACGCg -3'
miRNA:   3'- aCGg-GCCACUg--CAUGCCGCAGG-------UGCG- -5'
12806 3' -59 NC_003387.1 + 4062 0.69 0.35557
Target:  5'- cGCCuCGGUcacGGCGUGCGG-GUUCugcCGCa -3'
miRNA:   3'- aCGG-GCCA---CUGCAUGCCgCAGGu--GCG- -5'
12806 3' -59 NC_003387.1 + 50690 0.69 0.35557
Target:  5'- aGCUCGGcGACG-GCGGCcGUCgGCGg -3'
miRNA:   3'- aCGGGCCaCUGCaUGCCG-CAGgUGCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.