miRNA display CGI


Results 21 - 40 of 91 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12806 3' -59 NC_003387.1 + 11849 0.68 0.425337
Target:  5'- cGCCUGG-GACaugaucGCGGCGggggCCAUGUg -3'
miRNA:   3'- aCGGGCCaCUGca----UGCCGCa---GGUGCG- -5'
12806 3' -59 NC_003387.1 + 8286 0.68 0.425337
Target:  5'- cGCCCGaGggcGACGUGuggaucacCGGCG-CgGCGCa -3'
miRNA:   3'- aCGGGC-Ca--CUGCAU--------GCCGCaGgUGCG- -5'
12806 3' -59 NC_003387.1 + 30245 0.7 0.339434
Target:  5'- cGCCCGGUacGACGccGCGGuCGUCgAguacCGCg -3'
miRNA:   3'- aCGGGCCA--CUGCa-UGCC-GCAGgU----GCG- -5'
12806 3' -59 NC_003387.1 + 37918 0.72 0.223856
Target:  5'- cUGCCCGGUGGCu--CGGCaccgCCGgGCa -3'
miRNA:   3'- -ACGGGCCACUGcauGCCGca--GGUgCG- -5'
12806 3' -59 NC_003387.1 + 458 0.67 0.482694
Target:  5'- cGCCgCGGcGGCcgACGGCGaCCgGCGCg -3'
miRNA:   3'- aCGG-GCCaCUGcaUGCCGCaGG-UGCG- -5'
12806 3' -59 NC_003387.1 + 29722 0.67 0.444013
Target:  5'- cGCCCaGGccGACG-ACGGCaG-CUACGCg -3'
miRNA:   3'- aCGGG-CCa-CUGCaUGCCG-CaGGUGCG- -5'
12806 3' -59 NC_003387.1 + 43104 0.68 0.407136
Target:  5'- cGCCgGGUacgagcgcGACGgcGCGGCG-CCGCGg -3'
miRNA:   3'- aCGGgCCA--------CUGCa-UGCCGCaGGUGCg -5'
12806 3' -59 NC_003387.1 + 23819 0.73 0.202037
Target:  5'- gGCUCGGgcgGugGccCGGCGcCCGCGCc -3'
miRNA:   3'- aCGGGCCa--CugCauGCCGCaGGUGCG- -5'
12806 3' -59 NC_003387.1 + 41756 0.67 0.444013
Target:  5'- gGCCgCGGUGugGUGCGaccucgaCGUCaagccggGCGCg -3'
miRNA:   3'- aCGG-GCCACugCAUGCc------GCAGg------UGCG- -5'
12806 3' -59 NC_003387.1 + 37267 0.76 0.128842
Target:  5'- gGCCCGcGUGGCGgucaaGGCG-CCugGCg -3'
miRNA:   3'- aCGGGC-CACUGCaug--CCGCaGGugCG- -5'
12806 3' -59 NC_003387.1 + 49488 0.68 0.416176
Target:  5'- cGgCCGGUG-CGcccgccCGGCGUCgACGUg -3'
miRNA:   3'- aCgGGCCACuGCau----GCCGCAGgUGCG- -5'
12806 3' -59 NC_003387.1 + 44639 0.68 0.434617
Target:  5'- gGCCCuGGccGCGgccuCGGCGaUCCugGCc -3'
miRNA:   3'- aCGGG-CCacUGCau--GCCGC-AGGugCG- -5'
12806 3' -59 NC_003387.1 + 40541 0.68 0.398221
Target:  5'- cUGCCCGaG-GGCGUGacccccgaGGCGUUCgagGCGCu -3'
miRNA:   3'- -ACGGGC-CaCUGCAUg-------CCGCAGG---UGCG- -5'
12806 3' -59 NC_003387.1 + 49581 0.69 0.347435
Target:  5'- cGCCCGcUGcCGgGCGGUGgCCugGCa -3'
miRNA:   3'- aCGGGCcACuGCaUGCCGCaGGugCG- -5'
12806 3' -59 NC_003387.1 + 11372 0.7 0.316239
Target:  5'- gGCCgGGUcGuCGUuuGCGGCGaucggcgCCACGCu -3'
miRNA:   3'- aCGGgCCA-CuGCA--UGCCGCa------GGUGCG- -5'
12806 3' -59 NC_003387.1 + 25808 0.72 0.253911
Target:  5'- gGCCuCGGUGGCGgccugcuCGGCGgCCugGg -3'
miRNA:   3'- aCGG-GCCACUGCau-----GCCGCaGGugCg -5'
12806 3' -59 NC_003387.1 + 25178 0.67 0.492618
Target:  5'- gGCgCGGUGGCcc-CGGCGccgCCGcCGCg -3'
miRNA:   3'- aCGgGCCACUGcauGCCGCa--GGU-GCG- -5'
12806 3' -59 NC_003387.1 + 29761 0.67 0.482694
Target:  5'- cGCCgaCGGcaUGACGaucagcUACGGCGUgCACcGCa -3'
miRNA:   3'- aCGG--GCC--ACUGC------AUGCCGCAgGUG-CG- -5'
12806 3' -59 NC_003387.1 + 27375 0.67 0.472867
Target:  5'- aGaCUCGGUGcggGCGUucACGGCGUUCucuguguacgacGCGCg -3'
miRNA:   3'- aC-GGGCCAC---UGCA--UGCCGCAGG------------UGCG- -5'
12806 3' -59 NC_003387.1 + 29054 0.67 0.447804
Target:  5'- cGCCgGGgGGCGUuuCGGCGUUucuagggccuguugaCGCGCc -3'
miRNA:   3'- aCGGgCCaCUGCAu-GCCGCAG---------------GUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.