miRNA display CGI


Results 1 - 20 of 91 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12806 3' -59 NC_003387.1 + 2477 0.82 0.044845
Target:  5'- cGCCCGGcgcUGACGUACGGCG-CCuCGUa -3'
miRNA:   3'- aCGGGCC---ACUGCAUGCCGCaGGuGCG- -5'
12806 3' -59 NC_003387.1 + 34704 0.68 0.398221
Target:  5'- gGCCUGGU-ACaUGCGGCGcgaCCugGCc -3'
miRNA:   3'- aCGGGCCAcUGcAUGCCGCa--GGugCG- -5'
12806 3' -59 NC_003387.1 + 43104 0.68 0.407136
Target:  5'- cGCCgGGUacgagcgcGACGgcGCGGCG-CCGCGg -3'
miRNA:   3'- aCGGgCCA--------CUGCa-UGCCGCaGGUGCg -5'
12806 3' -59 NC_003387.1 + 11556 0.66 0.558106
Target:  5'- gUGCUgacugCGGUGgcgaucggcaccaagGCGUACGGCGU-CGCGa -3'
miRNA:   3'- -ACGG-----GCCAC---------------UGCAUGCCGCAgGUGCg -5'
12806 3' -59 NC_003387.1 + 23819 0.73 0.202037
Target:  5'- gGCUCGGgcgGugGccCGGCGcCCGCGCc -3'
miRNA:   3'- aCGGGCCa--CugCauGCCGCaGGUGCG- -5'
12806 3' -59 NC_003387.1 + 37918 0.72 0.223856
Target:  5'- cUGCCCGGUGGCu--CGGCaccgCCGgGCa -3'
miRNA:   3'- -ACGGGCCACUGcauGCCGca--GGUgCG- -5'
12806 3' -59 NC_003387.1 + 25886 0.71 0.287203
Target:  5'- gGCCUGGUGcucccCGGCGUCCagggcgGCGCg -3'
miRNA:   3'- aCGGGCCACugcauGCCGCAGG------UGCG- -5'
12806 3' -59 NC_003387.1 + 21935 0.7 0.316239
Target:  5'- gUGCUCGGcGGCGgggGCGGCGg-CAgGCg -3'
miRNA:   3'- -ACGGGCCaCUGCa--UGCCGCagGUgCG- -5'
12806 3' -59 NC_003387.1 + 31174 0.7 0.339434
Target:  5'- uUGCCuCGGUGcCGgGCGGCacGUCgaACGCg -3'
miRNA:   3'- -ACGG-GCCACuGCaUGCCG--CAGg-UGCG- -5'
12806 3' -59 NC_003387.1 + 40541 0.68 0.398221
Target:  5'- cUGCCCGaG-GGCGUGacccccgaGGCGUUCgagGCGCu -3'
miRNA:   3'- -ACGGGC-CaCUGCAUg-------CCGCAGG---UGCG- -5'
12806 3' -59 NC_003387.1 + 49581 0.69 0.347435
Target:  5'- cGCCCGcUGcCGgGCGGUGgCCugGCa -3'
miRNA:   3'- aCGGGCcACuGCaUGCCGCaGGugCG- -5'
12806 3' -59 NC_003387.1 + 23043 0.7 0.323836
Target:  5'- gUGCCCGGcGGCGUGC--CGaUCACGCa -3'
miRNA:   3'- -ACGGGCCaCUGCAUGccGCaGGUGCG- -5'
12806 3' -59 NC_003387.1 + 2711 0.8 0.070335
Target:  5'- gUGCUCGGcGACGcggGCGGCGggcaggCCACGCa -3'
miRNA:   3'- -ACGGGCCaCUGCa--UGCCGCa-----GGUGCG- -5'
12806 3' -59 NC_003387.1 + 4062 0.69 0.35557
Target:  5'- cGCCuCGGUcacGGCGUGCGG-GUUCugcCGCa -3'
miRNA:   3'- aCGG-GCCA---CUGCAUGCCgCAGGu--GCG- -5'
12806 3' -59 NC_003387.1 + 48836 0.78 0.092837
Target:  5'- cUGCUCGGcgcGACGcACGGCGUgCACGCc -3'
miRNA:   3'- -ACGGGCCa--CUGCaUGCCGCAgGUGCG- -5'
12806 3' -59 NC_003387.1 + 11372 0.7 0.316239
Target:  5'- gGCCgGGUcGuCGUuuGCGGCGaucggcgCCACGCu -3'
miRNA:   3'- aCGGgCCA-CuGCA--UGCCGCa------GGUGCG- -5'
12806 3' -59 NC_003387.1 + 10638 0.69 0.363006
Target:  5'- cGCggCGGUGAaggGUACGGCGUUCggccucgACGCg -3'
miRNA:   3'- aCGg-GCCACUg--CAUGCCGCAGG-------UGCG- -5'
12806 3' -59 NC_003387.1 + 1761 0.68 0.407136
Target:  5'- aGCCCGGcGGCGgcgcUGGCGcCCGaGCu -3'
miRNA:   3'- aCGGGCCaCUGCau--GCCGCaGGUgCG- -5'
12806 3' -59 NC_003387.1 + 37267 0.76 0.128842
Target:  5'- gGCCCGcGUGGCGgucaaGGCG-CCugGCg -3'
miRNA:   3'- aCGGGC-CACUGCaug--CCGCaGGugCG- -5'
12806 3' -59 NC_003387.1 + 25808 0.72 0.253911
Target:  5'- gGCCuCGGUGGCGgccugcuCGGCGgCCugGg -3'
miRNA:   3'- aCGG-GCCACUGCau-----GCCGCaGGugCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.