miRNA display CGI


Results 1 - 20 of 91 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12806 3' -59 NC_003387.1 + 34598 1.12 0.000306
Target:  5'- gUGCCCGGUGACGUACGGCGUCCACGCa -3'
miRNA:   3'- -ACGGGCCACUGCAUGCCGCAGGUGCG- -5'
12806 3' -59 NC_003387.1 + 2477 0.82 0.044845
Target:  5'- cGCCCGGcgcUGACGUACGGCG-CCuCGUa -3'
miRNA:   3'- aCGGGCC---ACUGCAUGCCGCaGGuGCG- -5'
12806 3' -59 NC_003387.1 + 2711 0.8 0.070335
Target:  5'- gUGCUCGGcGACGcggGCGGCGggcaggCCACGCa -3'
miRNA:   3'- -ACGGGCCaCUGCa--UGCCGCa-----GGUGCG- -5'
12806 3' -59 NC_003387.1 + 48836 0.78 0.092837
Target:  5'- cUGCUCGGcgcGACGcACGGCGUgCACGCc -3'
miRNA:   3'- -ACGGGCCa--CUGCaUGCCGCAgGUGCG- -5'
12806 3' -59 NC_003387.1 + 39875 0.76 0.122052
Target:  5'- gGCCCGccg--GUGCGGUGUCCACGCc -3'
miRNA:   3'- aCGGGCcacugCAUGCCGCAGGUGCG- -5'
12806 3' -59 NC_003387.1 + 37267 0.76 0.128842
Target:  5'- gGCCCGcGUGGCGgucaaGGCG-CCugGCg -3'
miRNA:   3'- aCGGGC-CACUGCaug--CCGCaGGugCG- -5'
12806 3' -59 NC_003387.1 + 1243 0.74 0.162608
Target:  5'- cUGCCCGGUcuGGCGUucGCGGUGUCgguugcggugcggcUGCGCg -3'
miRNA:   3'- -ACGGGCCA--CUGCA--UGCCGCAG--------------GUGCG- -5'
12806 3' -59 NC_003387.1 + 4580 0.74 0.172783
Target:  5'- gGCCuCGGUGGCGcgcUGCGcGCGggucugCCACGUg -3'
miRNA:   3'- aCGG-GCCACUGC---AUGC-CGCa-----GGUGCG- -5'
12806 3' -59 NC_003387.1 + 5804 0.74 0.186906
Target:  5'- gUGCCCGGcucaaGCGUGCGGCcGUgCACGa -3'
miRNA:   3'- -ACGGGCCac---UGCAUGCCG-CAgGUGCg -5'
12806 3' -59 NC_003387.1 + 41627 0.74 0.186906
Target:  5'- aGCCCGGUcGCGaGCGGC-UgCACGCc -3'
miRNA:   3'- aCGGGCCAcUGCaUGCCGcAgGUGCG- -5'
12806 3' -59 NC_003387.1 + 35859 0.74 0.186906
Target:  5'- cGCCUGG--GCGUGCGGCGccaucUCCucGCGCg -3'
miRNA:   3'- aCGGGCCacUGCAUGCCGC-----AGG--UGCG- -5'
12806 3' -59 NC_003387.1 + 23819 0.73 0.202037
Target:  5'- gGCUCGGgcgGugGccCGGCGcCCGCGCc -3'
miRNA:   3'- aCGGGCCa--CugCauGCCGCaGGUGCG- -5'
12806 3' -59 NC_003387.1 + 31319 0.73 0.207312
Target:  5'- cGCCgGG-GGCGU-UGGCGUCCAagGCa -3'
miRNA:   3'- aCGGgCCaCUGCAuGCCGCAGGUg-CG- -5'
12806 3' -59 NC_003387.1 + 37918 0.72 0.223856
Target:  5'- cUGCCCGGUGGCu--CGGCaccgCCGgGCa -3'
miRNA:   3'- -ACGGGCCACUGcauGCCGca--GGUgCG- -5'
12806 3' -59 NC_003387.1 + 15931 0.72 0.229615
Target:  5'- cGUCgCGGUGGCGUGCG-CGUCggccaGCGCc -3'
miRNA:   3'- aCGG-GCCACUGCAUGCcGCAGg----UGCG- -5'
12806 3' -59 NC_003387.1 + 29301 0.72 0.235499
Target:  5'- aUGCCCGcaaUGACGca-GGCG-CCGCGCu -3'
miRNA:   3'- -ACGGGCc--ACUGCaugCCGCaGGUGCG- -5'
12806 3' -59 NC_003387.1 + 18524 0.72 0.241509
Target:  5'- cGCCgCGGUGGCacGCaGGCGUUCGCGa -3'
miRNA:   3'- aCGG-GCCACUGcaUG-CCGCAGGUGCg -5'
12806 3' -59 NC_003387.1 + 25808 0.72 0.253911
Target:  5'- gGCCuCGGUGGCGgccugcuCGGCGgCCugGg -3'
miRNA:   3'- aCGG-GCCACUGCau-----GCCGCaGGugCg -5'
12806 3' -59 NC_003387.1 + 25886 0.71 0.287203
Target:  5'- gGCCUGGUGcucccCGGCGUCCagggcgGCGCg -3'
miRNA:   3'- aCGGGCCACugcauGCCGCAGG------UGCG- -5'
12806 3' -59 NC_003387.1 + 50261 0.7 0.301451
Target:  5'- cGCCgggCGGUGcaccuCGgccugGCGcGCGUCCAUGCg -3'
miRNA:   3'- aCGG---GCCACu----GCa----UGC-CGCAGGUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.