miRNA display CGI


Results 1 - 20 of 91 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12806 3' -59 NC_003387.1 + 458 0.67 0.482694
Target:  5'- cGCCgCGGcGGCcgACGGCGaCCgGCGCg -3'
miRNA:   3'- aCGG-GCCaCUGcaUGCCGCaGG-UGCG- -5'
12806 3' -59 NC_003387.1 + 1243 0.74 0.162608
Target:  5'- cUGCCCGGUcuGGCGUucGCGGUGUCgguugcggugcggcUGCGCg -3'
miRNA:   3'- -ACGGGCCA--CUGCA--UGCCGCAG--------------GUGCG- -5'
12806 3' -59 NC_003387.1 + 1761 0.68 0.407136
Target:  5'- aGCCCGGcGGCGgcgcUGGCGcCCGaGCu -3'
miRNA:   3'- aCGGGCCaCUGCau--GCCGCaGGUgCG- -5'
12806 3' -59 NC_003387.1 + 2021 0.66 0.533193
Target:  5'- cUGCUCGGUGcCGccgACGGCcG-CCGuCGCc -3'
miRNA:   3'- -ACGGGCCACuGCa--UGCCG-CaGGU-GCG- -5'
12806 3' -59 NC_003387.1 + 2477 0.82 0.044845
Target:  5'- cGCCCGGcgcUGACGUACGGCG-CCuCGUa -3'
miRNA:   3'- aCGGGCC---ACUGCAUGCCGCaGGuGCG- -5'
12806 3' -59 NC_003387.1 + 2511 0.69 0.38077
Target:  5'- aGUCCaGGUGACGcGCGGgucgucguugcCGUCCcggucGCGCa -3'
miRNA:   3'- aCGGG-CCACUGCaUGCC-----------GCAGG-----UGCG- -5'
12806 3' -59 NC_003387.1 + 2711 0.8 0.070335
Target:  5'- gUGCUCGGcGACGcggGCGGCGggcaggCCACGCa -3'
miRNA:   3'- -ACGGGCCaCUGCa--UGCCGCa-----GGUGCG- -5'
12806 3' -59 NC_003387.1 + 3931 0.67 0.441183
Target:  5'- cGCCCGGUGggcgcugcugcagaACGaccCGGUGgUCGCGCu -3'
miRNA:   3'- aCGGGCCAC--------------UGCau-GCCGCaGGUGCG- -5'
12806 3' -59 NC_003387.1 + 4062 0.69 0.35557
Target:  5'- cGCCuCGGUcacGGCGUGCGG-GUUCugcCGCa -3'
miRNA:   3'- aCGG-GCCA---CUGCAUGCCgCAGGu--GCG- -5'
12806 3' -59 NC_003387.1 + 4580 0.74 0.172783
Target:  5'- gGCCuCGGUGGCGcgcUGCGcGCGggucugCCACGUg -3'
miRNA:   3'- aCGG-GCCACUGC---AUGC-CGCa-----GGUGCG- -5'
12806 3' -59 NC_003387.1 + 4925 0.68 0.407136
Target:  5'- cUGCCCGGc-----GCGGCGUCgCGCGUu -3'
miRNA:   3'- -ACGGGCCacugcaUGCCGCAG-GUGCG- -5'
12806 3' -59 NC_003387.1 + 5804 0.74 0.186906
Target:  5'- gUGCCCGGcucaaGCGUGCGGCcGUgCACGa -3'
miRNA:   3'- -ACGGGCCac---UGCAUGCCG-CAgGUGCg -5'
12806 3' -59 NC_003387.1 + 6418 0.67 0.482694
Target:  5'- gGCCgCGGUGAC-UGCGG-G-CCAgGCc -3'
miRNA:   3'- aCGG-GCCACUGcAUGCCgCaGGUgCG- -5'
12806 3' -59 NC_003387.1 + 7444 0.66 0.506667
Target:  5'- aUGCCCGcccGACGggguCGGCGUggcgauccauuccagCCGCGUc -3'
miRNA:   3'- -ACGGGCca-CUGCau--GCCGCA---------------GGUGCG- -5'
12806 3' -59 NC_003387.1 + 7813 0.67 0.453523
Target:  5'- aGCCCGGcGACGcgaUACGGauaUgCGCGCc -3'
miRNA:   3'- aCGGGCCaCUGC---AUGCCgc-AgGUGCG- -5'
12806 3' -59 NC_003387.1 + 8286 0.68 0.425337
Target:  5'- cGCCCGaGggcGACGUGuggaucacCGGCG-CgGCGCa -3'
miRNA:   3'- aCGGGC-Ca--CUGCAU--------GCCGCaGgUGCG- -5'
12806 3' -59 NC_003387.1 + 9025 0.7 0.331568
Target:  5'- -aCCUGGcgGGCGccguCGGCGaUCCACGCc -3'
miRNA:   3'- acGGGCCa-CUGCau--GCCGC-AGGUGCG- -5'
12806 3' -59 NC_003387.1 + 10401 0.69 0.363839
Target:  5'- cGCUCGGUGAUcUGCucgucGCG-CCACGCc -3'
miRNA:   3'- aCGGGCCACUGcAUGc----CGCaGGUGCG- -5'
12806 3' -59 NC_003387.1 + 10638 0.69 0.363006
Target:  5'- cGCggCGGUGAaggGUACGGCGUUCggccucgACGCg -3'
miRNA:   3'- aCGg-GCCACUg--CAUGCCGCAGG-------UGCG- -5'
12806 3' -59 NC_003387.1 + 10678 0.66 0.543528
Target:  5'- cGCCgCGGUcGAUcu-UGGCGcCCugGCg -3'
miRNA:   3'- aCGG-GCCA-CUGcauGCCGCaGGugCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.