miRNA display CGI


Results 1 - 20 of 33 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12806 5' -52.9 NC_003387.1 + 37868 0.66 0.840792
Target:  5'- uCGCCUCGACGAUGcuugaacuugaccGCGUCAaccccgaGGGc- -3'
miRNA:   3'- cGCGGAGCUGCUACa------------UGCAGU-------CCUag -5'
12806 5' -52.9 NC_003387.1 + 38892 0.66 0.835437
Target:  5'- cGCGCCgaacCGugGAgcggGUGCGggcguuugcucgcUguGGAUCu -3'
miRNA:   3'- -CGCGGa---GCugCUa---CAUGC-------------AguCCUAG- -5'
12806 5' -52.9 NC_003387.1 + 49833 0.66 0.821711
Target:  5'- cGCGCC-CGGCGAgcgaguuccugccgaUGUACGaCgAGGAguUCg -3'
miRNA:   3'- -CGCGGaGCUGCU---------------ACAUGCaG-UCCU--AG- -5'
12806 5' -52.9 NC_003387.1 + 26795 0.66 0.817972
Target:  5'- cCGCCUCGACGAggccGCGcUGGuGGUCg -3'
miRNA:   3'- cGCGGAGCUGCUaca-UGCaGUC-CUAG- -5'
12806 5' -52.9 NC_003387.1 + 30990 0.66 0.817972
Target:  5'- aGCGCCUCGGCGAcgauuuccACGacCAGG-UCg -3'
miRNA:   3'- -CGCGGAGCUGCUaca-----UGCa-GUCCuAG- -5'
12806 5' -52.9 NC_003387.1 + 33214 0.66 0.817972
Target:  5'- aGCGCgaggcccgCUCGGCGAUGgcCGUCAaGAc- -3'
miRNA:   3'- -CGCG--------GAGCUGCUACauGCAGUcCUag -5'
12806 5' -52.9 NC_003387.1 + 8273 0.67 0.808485
Target:  5'- aGCGCCUCGcgcaGCGccucGUGcGCGUCGGcGggCa -3'
miRNA:   3'- -CGCGGAGC----UGC----UACaUGCAGUC-CuaG- -5'
12806 5' -52.9 NC_003387.1 + 43223 0.67 0.797831
Target:  5'- cGUGCCgucgggguacucgUUGACGccGUAC-UCGGGGUCg -3'
miRNA:   3'- -CGCGG-------------AGCUGCuaCAUGcAGUCCUAG- -5'
12806 5' -52.9 NC_003387.1 + 23031 0.67 0.788954
Target:  5'- aGCGCCUCGAccucggccacguCGAcGUcgACGUCGGcGAg- -3'
miRNA:   3'- -CGCGGAGCU------------GCUaCA--UGCAGUC-CUag -5'
12806 5' -52.9 NC_003387.1 + 27932 0.67 0.768755
Target:  5'- gGCGCCUCGGgGggGgcuCGgUCGGGGcgcUCg -3'
miRNA:   3'- -CGCGGAGCUgCuaCau-GC-AGUCCU---AG- -5'
12806 5' -52.9 NC_003387.1 + 11672 0.68 0.758433
Target:  5'- aGCgGCCUCGGCGAUc-GCGUgGGuGUCa -3'
miRNA:   3'- -CG-CGGAGCUGCUAcaUGCAgUCcUAG- -5'
12806 5' -52.9 NC_003387.1 + 12899 0.68 0.747979
Target:  5'- aGCgGCCUCGACG----GCGUgGGGGUg -3'
miRNA:   3'- -CG-CGGAGCUGCuacaUGCAgUCCUAg -5'
12806 5' -52.9 NC_003387.1 + 24605 0.68 0.726722
Target:  5'- cGgGCCUCGGCGAUcaGCGccUCAaGGUCg -3'
miRNA:   3'- -CgCGGAGCUGCUAcaUGC--AGUcCUAG- -5'
12806 5' -52.9 NC_003387.1 + 37570 0.68 0.705078
Target:  5'- cGCGCgUCGAgguaGGUGUACGcggCAaucGGGUCg -3'
miRNA:   3'- -CGCGgAGCUg---CUACAUGCa--GU---CCUAG- -5'
12806 5' -52.9 NC_003387.1 + 42186 0.69 0.694141
Target:  5'- aGCGCCUCaACGAggcgggcGUGCGcgagCAGGAc- -3'
miRNA:   3'- -CGCGGAGcUGCUa------CAUGCa---GUCCUag -5'
12806 5' -52.9 NC_003387.1 + 18563 0.69 0.694141
Target:  5'- uGUGCCcacaggugcgggUCGACccag-GCGUCAGGGUCg -3'
miRNA:   3'- -CGCGG------------AGCUGcuacaUGCAGUCCUAG- -5'
12806 5' -52.9 NC_003387.1 + 14124 0.69 0.683142
Target:  5'- aGCGCCUCGAUcaccgGcACGcUCAGGGUg -3'
miRNA:   3'- -CGCGGAGCUGcua--CaUGC-AGUCCUAg -5'
12806 5' -52.9 NC_003387.1 + 1422 0.69 0.672094
Target:  5'- gGCGCCgccgcCGACGAgcUGgcaggGC-UCGGGGUCg -3'
miRNA:   3'- -CGCGGa----GCUGCU--ACa----UGcAGUCCUAG- -5'
12806 5' -52.9 NC_003387.1 + 45759 0.69 0.661007
Target:  5'- cGC-CCUCGACGAgg-GCGgccagCAGGGUg -3'
miRNA:   3'- -CGcGGAGCUGCUacaUGCa----GUCCUAg -5'
12806 5' -52.9 NC_003387.1 + 6923 0.7 0.620943
Target:  5'- aCGCCUUGACGGgggcgguuaucgggGUGCGUgAGGGc- -3'
miRNA:   3'- cGCGGAGCUGCUa-------------CAUGCAgUCCUag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.