miRNA display CGI


Results 1 - 20 of 40 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12807 3' -54.8 NC_003387.1 + 319 0.67 0.627331
Target:  5'- --gCGGGUCGAGgUggUCGGCcugguagucgauuGGCUcGCc -3'
miRNA:   3'- aaaGCCCAGCUCgA--AGCCG-------------UCGAaCG- -5'
12807 3' -54.8 NC_003387.1 + 7955 0.67 0.650898
Target:  5'- -gUCGaGGUCGGGCcgcuucaCGGCgGGCgggUGCu -3'
miRNA:   3'- aaAGC-CCAGCUCGaa-----GCCG-UCGa--ACG- -5'
12807 3' -54.8 NC_003387.1 + 9734 0.66 0.706497
Target:  5'- --aCGGGUCG-GCgucaaggUCGGCcaGGCUcacGCg -3'
miRNA:   3'- aaaGCCCAGCuCGa------AGCCG--UCGAa--CG- -5'
12807 3' -54.8 NC_003387.1 + 10791 0.77 0.168744
Target:  5'- -gUCGGGUCGucGGCgUCGGCGGCacacgGCa -3'
miRNA:   3'- aaAGCCCAGC--UCGaAGCCGUCGaa---CG- -5'
12807 3' -54.8 NC_003387.1 + 16025 0.66 0.673271
Target:  5'- --cCGGGUCGAGauu---CAGCUUGCc -3'
miRNA:   3'- aaaGCCCAGCUCgaagccGUCGAACG- -5'
12807 3' -54.8 NC_003387.1 + 16086 0.68 0.538489
Target:  5'- -cUCGGGggcgccgUCGGGCaucgCGGCGGCcaGCa -3'
miRNA:   3'- aaAGCCC-------AGCUCGaa--GCCGUCGaaCG- -5'
12807 3' -54.8 NC_003387.1 + 18405 0.68 0.583684
Target:  5'- --aCGGGUCG-GCcgCgGGCAGCgcggGCu -3'
miRNA:   3'- aaaGCCCAGCuCGaaG-CCGUCGaa--CG- -5'
12807 3' -54.8 NC_003387.1 + 19447 0.77 0.178356
Target:  5'- -gUCGGuGUCGGGgaUCGGCGGCagGCc -3'
miRNA:   3'- aaAGCC-CAGCUCgaAGCCGUCGaaCG- -5'
12807 3' -54.8 NC_003387.1 + 22495 0.66 0.673271
Target:  5'- --cCGGG-CGAcgGCcUCGGCGGCgcGCu -3'
miRNA:   3'- aaaGCCCaGCU--CGaAGCCGUCGaaCG- -5'
12807 3' -54.8 NC_003387.1 + 24499 0.69 0.486165
Target:  5'- -cUC-GGUCGAGCcgucgCGGCugcGCUUGCc -3'
miRNA:   3'- aaAGcCCAGCUCGaa---GCCGu--CGAACG- -5'
12807 3' -54.8 NC_003387.1 + 24964 0.67 0.628454
Target:  5'- --cUGGGUCGG---UUGGCAGCUcgGCa -3'
miRNA:   3'- aaaGCCCAGCUcgaAGCCGUCGAa-CG- -5'
12807 3' -54.8 NC_003387.1 + 26673 0.66 0.717437
Target:  5'- --cCGGGUgcUGcGUUUCGuGCAGCUcGCg -3'
miRNA:   3'- aaaGCCCA--GCuCGAAGC-CGUCGAaCG- -5'
12807 3' -54.8 NC_003387.1 + 27937 0.66 0.695481
Target:  5'- -cUCGGGggGGGCUcggucggggcgcUCGGCGuGCUcgGCu -3'
miRNA:   3'- aaAGCCCagCUCGA------------AGCCGU-CGAa-CG- -5'
12807 3' -54.8 NC_003387.1 + 28862 0.66 0.717437
Target:  5'- --cCGGGUCGccgguccacGGCcccgacugCGGCGGCUuagGCg -3'
miRNA:   3'- aaaGCCCAGC---------UCGaa------GCCGUCGAa--CG- -5'
12807 3' -54.8 NC_003387.1 + 29612 0.66 0.695481
Target:  5'- ---aGGGUCGcgccgGGCgcCaGCGGCUUGCc -3'
miRNA:   3'- aaagCCCAGC-----UCGaaGcCGUCGAACG- -5'
12807 3' -54.8 NC_003387.1 + 29700 0.66 0.673271
Target:  5'- --cCGaGGUCGAgGCgcUCGGCGGCgcccagGCc -3'
miRNA:   3'- aaaGC-CCAGCU-CGa-AGCCGUCGaa----CG- -5'
12807 3' -54.8 NC_003387.1 + 31014 0.72 0.350596
Target:  5'- -aUCGGGcCGAGCgugcgccggggCGGCGGCcaGCa -3'
miRNA:   3'- aaAGCCCaGCUCGaa---------GCCGUCGaaCG- -5'
12807 3' -54.8 NC_003387.1 + 33938 1.08 0.001001
Target:  5'- cUUUCGGGUCGAGCUUCGGCAGCUUGCc -3'
miRNA:   3'- -AAAGCCCAGCUCGAAGCCGUCGAACG- -5'
12807 3' -54.8 NC_003387.1 + 34438 0.67 0.650898
Target:  5'- --cCGGGUCGGcGCUggUCGaGUAGUgcgGCg -3'
miRNA:   3'- aaaGCCCAGCU-CGA--AGC-CGUCGaa-CG- -5'
12807 3' -54.8 NC_003387.1 + 35109 0.69 0.528719
Target:  5'- --aCGGuUCGAGg-UCGGCGGCcUGCu -3'
miRNA:   3'- aaaGCCcAGCUCgaAGCCGUCGaACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.