Results 1 - 20 of 40 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
12807 | 3' | -54.8 | NC_003387.1 | + | 46761 | 0.72 | 0.343799 |
Target: 5'- --cCGGGUCGAGCgacucgcggUUCGGCgAGCUg-- -3' miRNA: 3'- aaaGCCCAGCUCG---------AAGCCG-UCGAacg -5' |
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12807 | 3' | -54.8 | NC_003387.1 | + | 41182 | 0.67 | 0.606022 |
Target: 5'- ----cGGUCGcaccGUUUCGGCGGCgUGCa -3' miRNA: 3'- aaagcCCAGCu---CGAAGCCGUCGaACG- -5' |
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12807 | 3' | -54.8 | NC_003387.1 | + | 24964 | 0.67 | 0.628454 |
Target: 5'- --cUGGGUCGG---UUGGCAGCUcgGCa -3' miRNA: 3'- aaaGCCCAGCUcgaAGCCGUCGAa-CG- -5' |
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12807 | 3' | -54.8 | NC_003387.1 | + | 29700 | 0.66 | 0.673271 |
Target: 5'- --cCGaGGUCGAgGCgcUCGGCGGCgcccagGCc -3' miRNA: 3'- aaaGC-CCAGCU-CGa-AGCCGUCGaa----CG- -5' |
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12807 | 3' | -54.8 | NC_003387.1 | + | 43737 | 0.68 | 0.550512 |
Target: 5'- --gCGGGagcccgCGAGCgugUUGGCGGCUaccGCg -3' miRNA: 3'- aaaGCCCa-----GCUCGa--AGCCGUCGAa--CG- -5' |
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12807 | 3' | -54.8 | NC_003387.1 | + | 40912 | 0.66 | 0.706497 |
Target: 5'- -aUCGcGGUCGGGCggUGGCcugauggacGGCgaGCu -3' miRNA: 3'- aaAGC-CCAGCUCGaaGCCG---------UCGaaCG- -5' |
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12807 | 3' | -54.8 | NC_003387.1 | + | 37828 | 0.66 | 0.710883 |
Target: 5'- -aUCGGGcCGAGCgaggucgggcaccccUgcgccCGGCGGCUcGCc -3' miRNA: 3'- aaAGCCCaGCUCG---------------Aa----GCCGUCGAaCG- -5' |
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12807 | 3' | -54.8 | NC_003387.1 | + | 26673 | 0.66 | 0.717437 |
Target: 5'- --cCGGGUgcUGcGUUUCGuGCAGCUcGCg -3' miRNA: 3'- aaaGCCCA--GCuCGAAGC-CGUCGAaCG- -5' |
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12807 | 3' | -54.8 | NC_003387.1 | + | 51742 | 0.71 | 0.397062 |
Target: 5'- ----cGGUCGAGCgccUCGGCGGCg-GCa -3' miRNA: 3'- aaagcCCAGCUCGa--AGCCGUCGaaCG- -5' |
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12807 | 3' | -54.8 | NC_003387.1 | + | 31014 | 0.72 | 0.350596 |
Target: 5'- -aUCGGGcCGAGCgugcgccggggCGGCGGCcaGCa -3' miRNA: 3'- aaAGCCCaGCUCGaa---------GCCGUCGaaCG- -5' |
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12807 | 3' | -54.8 | NC_003387.1 | + | 16086 | 0.68 | 0.538489 |
Target: 5'- -cUCGGGggcgccgUCGGGCaucgCGGCGGCcaGCa -3' miRNA: 3'- aaAGCCC-------AGCUCGaa--GCCGUCGaaCG- -5' |
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12807 | 3' | -54.8 | NC_003387.1 | + | 319 | 0.67 | 0.627331 |
Target: 5'- --gCGGGUCGAGgUggUCGGCcugguagucgauuGGCUcGCc -3' miRNA: 3'- aaaGCCCAGCUCgA--AGCCG-------------UCGAaCG- -5' |
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12807 | 3' | -54.8 | NC_003387.1 | + | 37461 | 0.67 | 0.628454 |
Target: 5'- -cUCGGcGUCGAccGaCUucUCGGCGGCgaccgUGCc -3' miRNA: 3'- aaAGCC-CAGCU--C-GA--AGCCGUCGa----ACG- -5' |
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12807 | 3' | -54.8 | NC_003387.1 | + | 7955 | 0.67 | 0.650898 |
Target: 5'- -gUCGaGGUCGGGCcgcuucaCGGCgGGCgggUGCu -3' miRNA: 3'- aaAGC-CCAGCUCGaa-----GCCG-UCGa--ACG- -5' |
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12807 | 3' | -54.8 | NC_003387.1 | + | 34438 | 0.67 | 0.650898 |
Target: 5'- --cCGGGUCGGcGCUggUCGaGUAGUgcgGCg -3' miRNA: 3'- aaaGCCCAGCU-CGA--AGC-CGUCGaa-CG- -5' |
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12807 | 3' | -54.8 | NC_003387.1 | + | 51472 | 0.66 | 0.662099 |
Target: 5'- ---gGGGUCcgucGGCUUCGGUGGCguaccgGCc -3' miRNA: 3'- aaagCCCAGc---UCGAAGCCGUCGaa----CG- -5' |
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12807 | 3' | -54.8 | NC_003387.1 | + | 16025 | 0.66 | 0.673271 |
Target: 5'- --cCGGGUCGAGauu---CAGCUUGCc -3' miRNA: 3'- aaaGCCCAGCUCgaagccGUCGAACG- -5' |
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12807 | 3' | -54.8 | NC_003387.1 | + | 49449 | 0.66 | 0.673271 |
Target: 5'- -gUCgGGGUCGucGUccauUUCGGCGGCcagGCg -3' miRNA: 3'- aaAG-CCCAGCu-CG----AAGCCGUCGaa-CG- -5' |
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12807 | 3' | -54.8 | NC_003387.1 | + | 29612 | 0.66 | 0.695481 |
Target: 5'- ---aGGGUCGcgccgGGCgcCaGCGGCUUGCc -3' miRNA: 3'- aaagCCCAGC-----UCGaaGcCGUCGAACG- -5' |
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12807 | 3' | -54.8 | NC_003387.1 | + | 44633 | 0.66 | 0.706497 |
Target: 5'- -cUCGGG-CGGGUUggcgccgacCGGCAGCggGUu -3' miRNA: 3'- aaAGCCCaGCUCGAa--------GCCGUCGaaCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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