miRNA display CGI


Results 21 - 40 of 42 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12807 5' -59 NC_003387.1 + 29593 0.69 0.319612
Target:  5'- -gAUGAcaccGUUGCCGguGaGGGUCGCGc -3'
miRNA:   3'- caUACU----CGACGGCguCgCCCAGCGCc -5'
12807 5' -59 NC_003387.1 + 30205 0.68 0.394328
Target:  5'- --cUGGGCcaggGUCGCGGCGGGcaugauccauUCGCGc -3'
miRNA:   3'- cauACUCGa---CGGCGUCGCCC----------AGCGCc -5'
12807 5' -59 NC_003387.1 + 30870 0.67 0.440443
Target:  5'- -cGUGAacuGUUGCgGUAGCGGGgccaUCGcCGGg -3'
miRNA:   3'- caUACU---CGACGgCGUCGCCC----AGC-GCC- -5'
12807 5' -59 NC_003387.1 + 30933 0.69 0.351456
Target:  5'- ---cGAGCUGCCGCcGCGGucaacuugagCGCGa -3'
miRNA:   3'- cauaCUCGACGGCGuCGCCca--------GCGCc -5'
12807 5' -59 NC_003387.1 + 31300 0.66 0.489473
Target:  5'- ---cGuAGCUGCUGCGcCGGGcCGcCGGg -3'
miRNA:   3'- cauaC-UCGACGGCGUcGCCCaGC-GCC- -5'
12807 5' -59 NC_003387.1 + 33048 0.67 0.459729
Target:  5'- ---aGGGCaccgUGCCGCAcCGGGUgCGCGc -3'
miRNA:   3'- cauaCUCG----ACGGCGUcGCCCA-GCGCc -5'
12807 5' -59 NC_003387.1 + 33973 1.09 0.000403
Target:  5'- gGUAUGAGCUGCCGCAGCGGGUCGCGGu -3'
miRNA:   3'- -CAUACUCGACGGCGUCGCCCAGCGCC- -5'
12807 5' -59 NC_003387.1 + 34420 0.68 0.359761
Target:  5'- ---cGGGCgccaccGCCGCGGcCGGGUCgGCGc -3'
miRNA:   3'- cauaCUCGa-----CGGCGUC-GCCCAG-CGCc -5'
12807 5' -59 NC_003387.1 + 35958 0.68 0.4033
Target:  5'- ---aGuGCUGCgCGguGCGGGUaauugaggcgaGCGGa -3'
miRNA:   3'- cauaCuCGACG-GCguCGCCCAg----------CGCC- -5'
12807 5' -59 NC_003387.1 + 37068 0.72 0.208561
Target:  5'- -cGUGGGCaacGCCaGCAGCGGGUUGUa- -3'
miRNA:   3'- caUACUCGa--CGG-CGUCGCCCAGCGcc -5'
12807 5' -59 NC_003387.1 + 44273 0.69 0.319612
Target:  5'- --uUGGGC-GCCGCcGCaGGUCaGCGGg -3'
miRNA:   3'- cauACUCGaCGGCGuCGcCCAG-CGCC- -5'
12807 5' -59 NC_003387.1 + 44635 0.67 0.4124
Target:  5'- ---cGGGCggguuggcGCCgaccgGCAGCGGGUuagCGCGGg -3'
miRNA:   3'- cauaCUCGa-------CGG-----CGUCGCCCA---GCGCC- -5'
12807 5' -59 NC_003387.1 + 44885 0.66 0.509792
Target:  5'- ---cGAGCUGaCGCAGCcgccGGG-CGCGc -3'
miRNA:   3'- cauaCUCGACgGCGUCG----CCCaGCGCc -5'
12807 5' -59 NC_003387.1 + 45864 0.69 0.319612
Target:  5'- ---cGAGCUGCUGCGGCuGcGcGcCGCGGc -3'
miRNA:   3'- cauaCUCGACGGCGUCG-C-C-CaGCGCC- -5'
12807 5' -59 NC_003387.1 + 46298 0.7 0.297183
Target:  5'- ---cGAGCagGCggCGCAGCGGGcCGCuGGg -3'
miRNA:   3'- cauaCUCGa-CG--GCGUCGCCCaGCG-CC- -5'
12807 5' -59 NC_003387.1 + 47475 0.8 0.057234
Target:  5'- --uUGAGUUcGCCGUcggccAGCGGGUCGCGGu -3'
miRNA:   3'- cauACUCGA-CGGCG-----UCGCCCAGCGCC- -5'
12807 5' -59 NC_003387.1 + 48093 0.68 0.368202
Target:  5'- -gGUGGcGCUGCCGCuGCGcc-CGCGGu -3'
miRNA:   3'- caUACU-CGACGGCGuCGCccaGCGCC- -5'
12807 5' -59 NC_003387.1 + 48245 0.68 0.4033
Target:  5'- ---cGGGCUcgGCCuucGCGGCGGGcUCgGCGGu -3'
miRNA:   3'- cauaCUCGA--CGG---CGUCGCCC-AG-CGCC- -5'
12807 5' -59 NC_003387.1 + 48741 0.66 0.509792
Target:  5'- ---cGAGUccaUGaCCGC-GCGGGUCGCc- -3'
miRNA:   3'- cauaCUCG---AC-GGCGuCGCCCAGCGcc -5'
12807 5' -59 NC_003387.1 + 48913 0.7 0.275309
Target:  5'- ---cGAGCUGCgCGUuggcacuuuugccGGCGGGUUGCuGGc -3'
miRNA:   3'- cauaCUCGACG-GCG-------------UCGCCCAGCG-CC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.