miRNA display CGI


Results 1 - 20 of 42 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12807 5' -59 NC_003387.1 + 1623 0.73 0.182904
Target:  5'- cGUGUGGGCaGCCuCGcGCGGGUUGCGc -3'
miRNA:   3'- -CAUACUCGaCGGcGU-CGCCCAGCGCc -5'
12807 5' -59 NC_003387.1 + 2051 0.66 0.469539
Target:  5'- ---cGAGCUgGCCGCGGUGGcGgCGCc- -3'
miRNA:   3'- cauaCUCGA-CGGCGUCGCC-CaGCGcc -5'
12807 5' -59 NC_003387.1 + 4474 0.67 0.459729
Target:  5'- ---cGAGCUgcugGCCGCGGCcgaccGGG-CGCGa -3'
miRNA:   3'- cauaCUCGA----CGGCGUCG-----CCCaGCGCc -5'
12807 5' -59 NC_003387.1 + 4532 0.67 0.450029
Target:  5'- -----cGCcGCCGguGCGGGcaccUUGCGGg -3'
miRNA:   3'- cauacuCGaCGGCguCGCCC----AGCGCC- -5'
12807 5' -59 NC_003387.1 + 7063 0.67 0.4124
Target:  5'- ---cGGGC-GCUGCGGCGGGaUCugacggaaGCGGa -3'
miRNA:   3'- cauaCUCGaCGGCGUCGCCC-AG--------CGCC- -5'
12807 5' -59 NC_003387.1 + 7386 0.67 0.421625
Target:  5'- --cUGAGCUgcacggaucgGCCGCGGcCGGGUCuuGCuGGc -3'
miRNA:   3'- cauACUCGA----------CGGCGUC-GCCCAG--CG-CC- -5'
12807 5' -59 NC_003387.1 + 10919 0.66 0.499587
Target:  5'- -gAUGAuCUGCCagGCGuGCGccaGGUCGCGGc -3'
miRNA:   3'- caUACUcGACGG--CGU-CGC---CCAGCGCC- -5'
12807 5' -59 NC_003387.1 + 14814 0.68 0.385487
Target:  5'- ---cGAGCcacGCgGgCAGCGGGUCGCc- -3'
miRNA:   3'- cauaCUCGa--CGgC-GUCGCCCAGCGcc -5'
12807 5' -59 NC_003387.1 + 18519 0.66 0.520084
Target:  5'- ---cGGGCcGCCGCGGUGGcaCGCaGGc -3'
miRNA:   3'- cauaCUCGaCGGCGUCGCCcaGCG-CC- -5'
12807 5' -59 NC_003387.1 + 20213 0.67 0.440443
Target:  5'- ---cGGGCgUGCaCGCAGCGGcagucGUCGCa- -3'
miRNA:   3'- cauaCUCG-ACG-GCGUCGCC-----CAGCGcc -5'
12807 5' -59 NC_003387.1 + 22443 0.66 0.479455
Target:  5'- ----aGGCgcggGCCGCGGCGuuGGccUCGCGGu -3'
miRNA:   3'- cauacUCGa---CGGCGUCGC--CC--AGCGCC- -5'
12807 5' -59 NC_003387.1 + 23849 0.67 0.421625
Target:  5'- ----aAGCcGCCGCAGuCGGGgcCGUGGa -3'
miRNA:   3'- cauacUCGaCGGCGUC-GCCCa-GCGCC- -5'
12807 5' -59 NC_003387.1 + 24301 0.72 0.203192
Target:  5'- -cAUGAGCcGCCGCAGCagccGGGUCuGCu- -3'
miRNA:   3'- caUACUCGaCGGCGUCG----CCCAG-CGcc -5'
12807 5' -59 NC_003387.1 + 24836 0.74 0.164428
Target:  5'- cGUGUGcGCUGuCUGCGGcCGGGUgCGUGGu -3'
miRNA:   3'- -CAUACuCGAC-GGCGUC-GCCCA-GCGCC- -5'
12807 5' -59 NC_003387.1 + 25982 0.66 0.509792
Target:  5'- ---gGGGUaUGCCGCucGCcgGGGUCGCGa -3'
miRNA:   3'- cauaCUCG-ACGGCGu-CG--CCCAGCGCc -5'
12807 5' -59 NC_003387.1 + 26688 0.68 0.376777
Target:  5'- -gAUGuGCggcGCCGuCGGCGGGUUgGUGGc -3'
miRNA:   3'- caUACuCGa--CGGC-GUCGCCCAG-CGCC- -5'
12807 5' -59 NC_003387.1 + 26942 0.67 0.430974
Target:  5'- ---cGAGCgGCCGagaaugucgAGCGGGUUGCcGGu -3'
miRNA:   3'- cauaCUCGaCGGCg--------UCGCCCAGCG-CC- -5'
12807 5' -59 NC_003387.1 + 27077 0.71 0.243389
Target:  5'- ---aGaAGCUGCCGCAGCaguGGGUCgGCa- -3'
miRNA:   3'- cauaC-UCGACGGCGUCG---CCCAG-CGcc -5'
12807 5' -59 NC_003387.1 + 27530 0.75 0.12887
Target:  5'- -gAUGcGCUGCCGCGGCGGcGgCGcCGGg -3'
miRNA:   3'- caUACuCGACGGCGUCGCC-CaGC-GCC- -5'
12807 5' -59 NC_003387.1 + 29425 0.71 0.26255
Target:  5'- ----aGGCcGCCGCAGCGGcccgCGCGGu -3'
miRNA:   3'- cauacUCGaCGGCGUCGCCca--GCGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.