miRNA display CGI


Results 1 - 20 of 42 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12807 5' -59 NC_003387.1 + 33973 1.09 0.000403
Target:  5'- gGUAUGAGCUGCCGCAGCGGGUCGCGGu -3'
miRNA:   3'- -CAUACUCGACGGCGUCGCCCAGCGCC- -5'
12807 5' -59 NC_003387.1 + 47475 0.8 0.057234
Target:  5'- --uUGAGUUcGCCGUcggccAGCGGGUCGCGGu -3'
miRNA:   3'- cauACUCGA-CGGCG-----UCGCCCAGCGCC- -5'
12807 5' -59 NC_003387.1 + 27530 0.75 0.12887
Target:  5'- -gAUGcGCUGCCGCGGCGGcGgCGcCGGg -3'
miRNA:   3'- caUACuCGACGGCGUCGCC-CaGC-GCC- -5'
12807 5' -59 NC_003387.1 + 24836 0.74 0.164428
Target:  5'- cGUGUGcGCUGuCUGCGGcCGGGUgCGUGGu -3'
miRNA:   3'- -CAUACuCGAC-GGCGUC-GCCCA-GCGCC- -5'
12807 5' -59 NC_003387.1 + 1623 0.73 0.182904
Target:  5'- cGUGUGGGCaGCCuCGcGCGGGUUGCGc -3'
miRNA:   3'- -CAUACUCGaCGGcGU-CGCCCAGCGCc -5'
12807 5' -59 NC_003387.1 + 24301 0.72 0.203192
Target:  5'- -cAUGAGCcGCCGCAGCagccGGGUCuGCu- -3'
miRNA:   3'- caUACUCGaCGGCGUCG----CCCAG-CGcc -5'
12807 5' -59 NC_003387.1 + 37068 0.72 0.208561
Target:  5'- -cGUGGGCaacGCCaGCAGCGGGUUGUa- -3'
miRNA:   3'- caUACUCGa--CGG-CGUCGCCCAGCGcc -5'
12807 5' -59 NC_003387.1 + 27077 0.71 0.243389
Target:  5'- ---aGaAGCUGCCGCAGCaguGGGUCgGCa- -3'
miRNA:   3'- cauaC-UCGACGGCGUCG---CCCAG-CGcc -5'
12807 5' -59 NC_003387.1 + 29425 0.71 0.26255
Target:  5'- ----aGGCcGCCGCAGCGGcccgCGCGGu -3'
miRNA:   3'- cauacUCGaCGGCGUCGCCca--GCGCC- -5'
12807 5' -59 NC_003387.1 + 48913 0.7 0.275309
Target:  5'- ---cGAGCUGCgCGUuggcacuuuugccGGCGGGUUGCuGGc -3'
miRNA:   3'- cauaCUCGACG-GCG-------------UCGCCCAGCG-CC- -5'
12807 5' -59 NC_003387.1 + 46298 0.7 0.297183
Target:  5'- ---cGAGCagGCggCGCAGCGGGcCGCuGGg -3'
miRNA:   3'- cauaCUCGa-CG--GCGUCGCCCaGCG-CC- -5'
12807 5' -59 NC_003387.1 + 45864 0.69 0.319612
Target:  5'- ---cGAGCUGCUGCGGCuGcGcGcCGCGGc -3'
miRNA:   3'- cauaCUCGACGGCGUCG-C-C-CaGCGCC- -5'
12807 5' -59 NC_003387.1 + 44273 0.69 0.319612
Target:  5'- --uUGGGC-GCCGCcGCaGGUCaGCGGg -3'
miRNA:   3'- cauACUCGaCGGCGuCGcCCAG-CGCC- -5'
12807 5' -59 NC_003387.1 + 29593 0.69 0.319612
Target:  5'- -gAUGAcaccGUUGCCGguGaGGGUCGCGc -3'
miRNA:   3'- caUACU----CGACGGCguCgCCCAGCGCc -5'
12807 5' -59 NC_003387.1 + 30933 0.69 0.351456
Target:  5'- ---cGAGCUGCCGCcGCGGucaacuugagCGCGa -3'
miRNA:   3'- cauaCUCGACGGCGuCGCCca--------GCGCc -5'
12807 5' -59 NC_003387.1 + 34420 0.68 0.359761
Target:  5'- ---cGGGCgccaccGCCGCGGcCGGGUCgGCGc -3'
miRNA:   3'- cauaCUCGa-----CGGCGUC-GCCCAG-CGCc -5'
12807 5' -59 NC_003387.1 + 48093 0.68 0.368202
Target:  5'- -gGUGGcGCUGCCGCuGCGcc-CGCGGu -3'
miRNA:   3'- caUACU-CGACGGCGuCGCccaGCGCC- -5'
12807 5' -59 NC_003387.1 + 52090 0.68 0.368202
Target:  5'- -----cGCUGCCGCGGCGGcGaCGCu- -3'
miRNA:   3'- cauacuCGACGGCGUCGCC-CaGCGcc -5'
12807 5' -59 NC_003387.1 + 26688 0.68 0.376777
Target:  5'- -gAUGuGCggcGCCGuCGGCGGGUUgGUGGc -3'
miRNA:   3'- caUACuCGa--CGGC-GUCGCCCAG-CGCC- -5'
12807 5' -59 NC_003387.1 + 14814 0.68 0.385487
Target:  5'- ---cGAGCcacGCgGgCAGCGGGUCGCc- -3'
miRNA:   3'- cauaCUCGa--CGgC-GUCGCCCAGCGcc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.