miRNA display CGI


Results 1 - 20 of 42 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12807 5' -59 NC_003387.1 + 47475 0.8 0.057234
Target:  5'- --uUGAGUUcGCCGUcggccAGCGGGUCGCGGu -3'
miRNA:   3'- cauACUCGA-CGGCG-----UCGCCCAGCGCC- -5'
12807 5' -59 NC_003387.1 + 2051 0.66 0.469539
Target:  5'- ---cGAGCUgGCCGCGGUGGcGgCGCc- -3'
miRNA:   3'- cauaCUCGA-CGGCGUCGCC-CaGCGcc -5'
12807 5' -59 NC_003387.1 + 7063 0.67 0.4124
Target:  5'- ---cGGGC-GCUGCGGCGGGaUCugacggaaGCGGa -3'
miRNA:   3'- cauaCUCGaCGGCGUCGCCC-AG--------CGCC- -5'
12807 5' -59 NC_003387.1 + 51355 0.68 0.4033
Target:  5'- --cUGAGC-GCCGaCGGCGaGGUgcCGUGGa -3'
miRNA:   3'- cauACUCGaCGGC-GUCGC-CCA--GCGCC- -5'
12807 5' -59 NC_003387.1 + 45864 0.69 0.319612
Target:  5'- ---cGAGCUGCUGCGGCuGcGcGcCGCGGc -3'
miRNA:   3'- cauaCUCGACGGCGUCG-C-C-CaGCGCC- -5'
12807 5' -59 NC_003387.1 + 46298 0.7 0.297183
Target:  5'- ---cGAGCagGCggCGCAGCGGGcCGCuGGg -3'
miRNA:   3'- cauaCUCGa-CG--GCGUCGCCCaGCG-CC- -5'
12807 5' -59 NC_003387.1 + 44885 0.66 0.509792
Target:  5'- ---cGAGCUGaCGCAGCcgccGGG-CGCGc -3'
miRNA:   3'- cauaCUCGACgGCGUCG----CCCaGCGCc -5'
12807 5' -59 NC_003387.1 + 33048 0.67 0.459729
Target:  5'- ---aGGGCaccgUGCCGCAcCGGGUgCGCGc -3'
miRNA:   3'- cauaCUCG----ACGGCGUcGCCCA-GCGCc -5'
12807 5' -59 NC_003387.1 + 48093 0.68 0.368202
Target:  5'- -gGUGGcGCUGCCGCuGCGcc-CGCGGu -3'
miRNA:   3'- caUACU-CGACGGCGuCGCccaGCGCC- -5'
12807 5' -59 NC_003387.1 + 29425 0.71 0.26255
Target:  5'- ----aGGCcGCCGCAGCGGcccgCGCGGu -3'
miRNA:   3'- cauacUCGaCGGCGUCGCCca--GCGCC- -5'
12807 5' -59 NC_003387.1 + 24836 0.74 0.164428
Target:  5'- cGUGUGcGCUGuCUGCGGcCGGGUgCGUGGu -3'
miRNA:   3'- -CAUACuCGAC-GGCGUC-GCCCA-GCGCC- -5'
12807 5' -59 NC_003387.1 + 27077 0.71 0.243389
Target:  5'- ---aGaAGCUGCCGCAGCaguGGGUCgGCa- -3'
miRNA:   3'- cauaC-UCGACGGCGUCG---CCCAG-CGcc -5'
12807 5' -59 NC_003387.1 + 23849 0.67 0.421625
Target:  5'- ----aAGCcGCCGCAGuCGGGgcCGUGGa -3'
miRNA:   3'- cauacUCGaCGGCGUC-GCCCa-GCGCC- -5'
12807 5' -59 NC_003387.1 + 25982 0.66 0.509792
Target:  5'- ---gGGGUaUGCCGCucGCcgGGGUCGCGa -3'
miRNA:   3'- cauaCUCG-ACGGCGu-CG--CCCAGCGCc -5'
12807 5' -59 NC_003387.1 + 22443 0.66 0.479455
Target:  5'- ----aGGCgcggGCCGCGGCGuuGGccUCGCGGu -3'
miRNA:   3'- cauacUCGa---CGGCGUCGC--CC--AGCGCC- -5'
12807 5' -59 NC_003387.1 + 35958 0.68 0.4033
Target:  5'- ---aGuGCUGCgCGguGCGGGUaauugaggcgaGCGGa -3'
miRNA:   3'- cauaCuCGACG-GCguCGCCCAg----------CGCC- -5'
12807 5' -59 NC_003387.1 + 48245 0.68 0.4033
Target:  5'- ---cGGGCUcgGCCuucGCGGCGGGcUCgGCGGu -3'
miRNA:   3'- cauaCUCGA--CGG---CGUCGCCC-AG-CGCC- -5'
12807 5' -59 NC_003387.1 + 44635 0.67 0.4124
Target:  5'- ---cGGGCggguuggcGCCgaccgGCAGCGGGUuagCGCGGg -3'
miRNA:   3'- cauaCUCGa-------CGG-----CGUCGCCCA---GCGCC- -5'
12807 5' -59 NC_003387.1 + 7386 0.67 0.421625
Target:  5'- --cUGAGCUgcacggaucgGCCGCGGcCGGGUCuuGCuGGc -3'
miRNA:   3'- cauACUCGA----------CGGCGUC-GCCCAG--CG-CC- -5'
12807 5' -59 NC_003387.1 + 4474 0.67 0.459729
Target:  5'- ---cGAGCUgcugGCCGCGGCcgaccGGG-CGCGa -3'
miRNA:   3'- cauaCUCGA----CGGCGUCG-----CCCaGCGCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.