miRNA display CGI


Results 21 - 40 of 108 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12808 5' -51.9 NC_003387.1 + 25618 0.7 0.686915
Target:  5'- aCGACGAAcagcACC-AGGA-CgacgaUGCCGACCc -3'
miRNA:   3'- -GCUGCUU----UGGcUCCUaGa----ACGGCUGG- -5'
12808 5' -51.9 NC_003387.1 + 19513 0.7 0.686915
Target:  5'- gCGugGAugccAACCGGGGcaacucgCUgcUGCCGAUCg -3'
miRNA:   3'- -GCugCU----UUGGCUCCua-----GA--ACGGCUGG- -5'
12808 5' -51.9 NC_003387.1 + 51382 0.7 0.686915
Target:  5'- -aGCGAGGCCGAuuucGGAUUcgGCCGgugACCg -3'
miRNA:   3'- gcUGCUUUGGCU----CCUAGaaCGGC---UGG- -5'
12808 5' -51.9 NC_003387.1 + 21169 0.7 0.694596
Target:  5'- uCGGCGAGGagcuuuCCGAGGAgcaggugcacgccgUGCUGGCCg -3'
miRNA:   3'- -GCUGCUUU------GGCUCCUaga-----------ACGGCUGG- -5'
12808 5' -51.9 NC_003387.1 + 37915 0.7 0.697879
Target:  5'- -uGCGc-GCCGuGGGUCggUGUCGACCa -3'
miRNA:   3'- gcUGCuuUGGCuCCUAGa-ACGGCUGG- -5'
12808 5' -51.9 NC_003387.1 + 46378 0.7 0.697879
Target:  5'- uGACGGccuGGUCGAGcuUCUUGCCGAUCg -3'
miRNA:   3'- gCUGCU---UUGGCUCcuAGAACGGCUGG- -5'
12808 5' -51.9 NC_003387.1 + 15271 0.7 0.719598
Target:  5'- uCGGuCGAcGCCGAGGAgaUgUUGCaCGACa -3'
miRNA:   3'- -GCU-GCUuUGGCUCCU--AgAACG-GCUGg -5'
12808 5' -51.9 NC_003387.1 + 24564 0.7 0.719598
Target:  5'- aCGGCGAGccgagcugGCCGggcucgaucgugGGGcgCUUGCgGGCCu -3'
miRNA:   3'- -GCUGCUU--------UGGC------------UCCuaGAACGgCUGG- -5'
12808 5' -51.9 NC_003387.1 + 30995 0.7 0.719598
Target:  5'- aGuuGggGCCGAggucaGGAUCggGCCGAgCg -3'
miRNA:   3'- gCugCuuUGGCU-----CCUAGaaCGGCUgG- -5'
12808 5' -51.9 NC_003387.1 + 42360 0.69 0.73033
Target:  5'- uGACGcAGGCCGugcGGAUCaugUGCgGGCUg -3'
miRNA:   3'- gCUGC-UUUGGCu--CCUAGa--ACGgCUGG- -5'
12808 5' -51.9 NC_003387.1 + 12441 0.69 0.73033
Target:  5'- gGGCGcuGCCGAGGuucgCUggcggcgGCCuGGCCg -3'
miRNA:   3'- gCUGCuuUGGCUCCua--GAa------CGG-CUGG- -5'
12808 5' -51.9 NC_003387.1 + 23337 0.69 0.73033
Target:  5'- gGGCGAGAUCGAGG-UCgucaCCGGCg -3'
miRNA:   3'- gCUGCUUUGGCUCCuAGaac-GGCUGg -5'
12808 5' -51.9 NC_003387.1 + 14574 0.69 0.740963
Target:  5'- uCGACG-AGCCGGGGAaCUugagGUCGAUa -3'
miRNA:   3'- -GCUGCuUUGGCUCCUaGAa---CGGCUGg -5'
12808 5' -51.9 NC_003387.1 + 16551 0.69 0.751483
Target:  5'- gGugGcAGAUCGGGGcggugagcAUCcgGCCGACCg -3'
miRNA:   3'- gCugC-UUUGGCUCC--------UAGaaCGGCUGG- -5'
12808 5' -51.9 NC_003387.1 + 1310 0.69 0.751483
Target:  5'- aGGCGgcGCCGcAGGcgCUcGCCGgucACCg -3'
miRNA:   3'- gCUGCuuUGGC-UCCuaGAaCGGC---UGG- -5'
12808 5' -51.9 NC_003387.1 + 7914 0.69 0.751483
Target:  5'- aCGACGucggucAGCCcgucGAGGAUCgcGCgGGCCa -3'
miRNA:   3'- -GCUGCu-----UUGG----CUCCUAGaaCGgCUGG- -5'
12808 5' -51.9 NC_003387.1 + 41827 0.69 0.76188
Target:  5'- uCGACG-AGCUGAGcAUCcugGUCGGCCa -3'
miRNA:   3'- -GCUGCuUUGGCUCcUAGaa-CGGCUGG- -5'
12808 5' -51.9 NC_003387.1 + 2297 0.69 0.76188
Target:  5'- uGGCGuacGCCGAGGcgacgAUC-UGCCGcCCg -3'
miRNA:   3'- gCUGCuu-UGGCUCC-----UAGaACGGCuGG- -5'
12808 5' -51.9 NC_003387.1 + 17119 0.69 0.76188
Target:  5'- --uCGggGCCGuAGGcgAUCgcugUGUCGACCa -3'
miRNA:   3'- gcuGCuuUGGC-UCC--UAGa---ACGGCUGG- -5'
12808 5' -51.9 NC_003387.1 + 18200 0.69 0.76188
Target:  5'- uCGACGGGcagcCCGAGGAUCgcggcGCCGcaGCg -3'
miRNA:   3'- -GCUGCUUu---GGCUCCUAGaa---CGGC--UGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.