miRNA display CGI


Results 1 - 20 of 108 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12808 5' -51.9 NC_003387.1 + 70 0.66 0.895478
Target:  5'- uCGAuCGgcGCCGcGGGcgUUUGCUGGCUc -3'
miRNA:   3'- -GCU-GCuuUGGC-UCCuaGAACGGCUGG- -5'
12808 5' -51.9 NC_003387.1 + 395 0.66 0.888206
Target:  5'- gCGACGGAACCGAucGcGUCgcgcugUGUugCGACCu -3'
miRNA:   3'- -GCUGCUUUGGCU--CcUAGa-----ACG--GCUGG- -5'
12808 5' -51.9 NC_003387.1 + 1209 0.66 0.885223
Target:  5'- gCGACGAAcgcggcgccuaacCCGcuGAUCcUGCUGGCCg -3'
miRNA:   3'- -GCUGCUUu------------GGCucCUAGaACGGCUGG- -5'
12808 5' -51.9 NC_003387.1 + 1310 0.69 0.751483
Target:  5'- aGGCGgcGCCGcAGGcgCUcGCCGgucACCg -3'
miRNA:   3'- gCUGCuuUGGC-UCCuaGAaCGGC---UGG- -5'
12808 5' -51.9 NC_003387.1 + 1948 0.66 0.895478
Target:  5'- uGAUccGGCCGcGGGUCUgGCCGGgCa -3'
miRNA:   3'- gCUGcuUUGGCuCCUAGAaCGGCUgG- -5'
12808 5' -51.9 NC_003387.1 + 2297 0.69 0.76188
Target:  5'- uGGCGuacGCCGAGGcgacgAUC-UGCCGcCCg -3'
miRNA:   3'- gCUGCuu-UGGCUCC-----UAGaACGGCuGG- -5'
12808 5' -51.9 NC_003387.1 + 2605 0.67 0.872869
Target:  5'- aCGGCGAucguGACC-AGGcgCUcGCgGGCCu -3'
miRNA:   3'- -GCUGCU----UUGGcUCCuaGAaCGgCUGG- -5'
12808 5' -51.9 NC_003387.1 + 3071 0.67 0.856515
Target:  5'- cCGACGucGACCcacucGGGGccaagCUcGCCGACCg -3'
miRNA:   3'- -GCUGCu-UUGG-----CUCCua---GAaCGGCUGG- -5'
12808 5' -51.9 NC_003387.1 + 3681 0.67 0.854826
Target:  5'- uGAcCGAGGCCGAGGggCUgcgguucaucaCCGACg -3'
miRNA:   3'- gCU-GCUUUGGCUCCuaGAac---------GGCUGg -5'
12808 5' -51.9 NC_003387.1 + 5428 0.66 0.888206
Target:  5'- cCGAgGAcaacucGACCGAGGGc---GCCGACg -3'
miRNA:   3'- -GCUgCU------UUGGCUCCUagaaCGGCUGg -5'
12808 5' -51.9 NC_003387.1 + 5734 0.71 0.653749
Target:  5'- cCGGCaAGACCGAGGAcgagCUgaacgccucgGCCGACg -3'
miRNA:   3'- -GCUGcUUUGGCUCCUa---GAa---------CGGCUGg -5'
12808 5' -51.9 NC_003387.1 + 6142 0.67 0.872869
Target:  5'- gGGCGccACUguGAGGGUCggcguaGCCGAUCa -3'
miRNA:   3'- gCUGCuuUGG--CUCCUAGaa----CGGCUGG- -5'
12808 5' -51.9 NC_003387.1 + 6288 0.74 0.490288
Target:  5'- aCGACGcGACCGuGGccg-UGCUGACCg -3'
miRNA:   3'- -GCUGCuUUGGCuCCuagaACGGCUGG- -5'
12808 5' -51.9 NC_003387.1 + 6669 0.73 0.521878
Target:  5'- cCGACGcggcGAUCGAGGugaUUGCCGACa -3'
miRNA:   3'- -GCUGCu---UUGGCUCCuagAACGGCUGg -5'
12808 5' -51.9 NC_003387.1 + 7168 0.68 0.830208
Target:  5'- cCGACGAGcugGCgGcGGAUCgccUUGCCGcacgGCCa -3'
miRNA:   3'- -GCUGCUU---UGgCuCCUAG---AACGGC----UGG- -5'
12808 5' -51.9 NC_003387.1 + 7394 0.69 0.77214
Target:  5'- -cACGGAucgGCCGcggccGGGUCUUGCUGGCa -3'
miRNA:   3'- gcUGCUU---UGGCu----CCUAGAACGGCUGg -5'
12808 5' -51.9 NC_003387.1 + 7510 0.69 0.769077
Target:  5'- uGACGAGucugcgGCCGAGGGUgaacgagagcggcaCUgcUGCCGcCCu -3'
miRNA:   3'- gCUGCUU------UGGCUCCUA--------------GA--ACGGCuGG- -5'
12808 5' -51.9 NC_003387.1 + 7914 0.69 0.751483
Target:  5'- aCGACGucggucAGCCcgucGAGGAUCgcGCgGGCCa -3'
miRNA:   3'- -GCUGCu-----UUGG----CUCCUAGaaCGgCUGG- -5'
12808 5' -51.9 NC_003387.1 + 8055 0.67 0.853978
Target:  5'- uGGCGAGcACCGgcagccccucggccAGGAUCgccgagGCCGcgGCCa -3'
miRNA:   3'- gCUGCUU-UGGC--------------UCCUAGaa----CGGC--UGG- -5'
12808 5' -51.9 NC_003387.1 + 9405 0.79 0.238213
Target:  5'- aGACGAucGCCGAGGAguggGCCGACg -3'
miRNA:   3'- gCUGCUu-UGGCUCCUagaaCGGCUGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.