miRNA display CGI


Results 1 - 20 of 108 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12808 5' -51.9 NC_003387.1 + 9405 0.79 0.238213
Target:  5'- aGACGAucGCCGAGGAguggGCCGACg -3'
miRNA:   3'- gCUGCUu-UGGCUCCUagaaCGGCUGg -5'
12808 5' -51.9 NC_003387.1 + 21169 0.7 0.694596
Target:  5'- uCGGCGAGGagcuuuCCGAGGAgcaggugcacgccgUGCUGGCCg -3'
miRNA:   3'- -GCUGCUUU------GGCUCCUaga-----------ACGGCUGG- -5'
12808 5' -51.9 NC_003387.1 + 15271 0.7 0.719598
Target:  5'- uCGGuCGAcGCCGAGGAgaUgUUGCaCGACa -3'
miRNA:   3'- -GCU-GCUuUGGCUCCU--AgAACG-GCUGg -5'
12808 5' -51.9 NC_003387.1 + 39602 0.66 0.909202
Target:  5'- -aGCGAGGCCGAcgaguGGAUC--GCCGAg- -3'
miRNA:   3'- gcUGCUUUGGCU-----CCUAGaaCGGCUgg -5'
12808 5' -51.9 NC_003387.1 + 43439 0.75 0.429997
Target:  5'- uCGACGAGGCCaAGG-UCaagcUGCUGACCg -3'
miRNA:   3'- -GCUGCUUUGGcUCCuAGa---ACGGCUGG- -5'
12808 5' -51.9 NC_003387.1 + 6288 0.74 0.490288
Target:  5'- aCGACGcGACCGuGGccg-UGCUGACCg -3'
miRNA:   3'- -GCUGCuUUGGCuCCuagaACGGCUGG- -5'
12808 5' -51.9 NC_003387.1 + 43978 0.73 0.521878
Target:  5'- uGGCGAAGCUGAcGGuUCacGUCGACCg -3'
miRNA:   3'- gCUGCUUUGGCU-CCuAGaaCGGCUGG- -5'
12808 5' -51.9 NC_003387.1 + 6669 0.73 0.521878
Target:  5'- cCGACGcggcGAUCGAGGugaUUGCCGACa -3'
miRNA:   3'- -GCUGCu---UUGGCUCCuagAACGGCUGg -5'
12808 5' -51.9 NC_003387.1 + 45256 0.72 0.598199
Target:  5'- gGACGcgGCUGGaauGGAUCgccacGCCGACCc -3'
miRNA:   3'- gCUGCuuUGGCU---CCUAGaa---CGGCUGG- -5'
12808 5' -51.9 NC_003387.1 + 51382 0.7 0.686915
Target:  5'- -aGCGAGGCCGAuuucGGAUUcgGCCGgugACCg -3'
miRNA:   3'- gcUGCUUUGGCU----CCUAGaaCGGC---UGG- -5'
12808 5' -51.9 NC_003387.1 + 5734 0.71 0.653749
Target:  5'- cCGGCaAGACCGAGGAcgagCUgaacgccucgGCCGACg -3'
miRNA:   3'- -GCUGcUUUGGCUCCUa---GAa---------CGGCUGg -5'
12808 5' -51.9 NC_003387.1 + 33595 0.73 0.54337
Target:  5'- gCGACGAAgaucccGCCGAGGugug-GCaCGACCu -3'
miRNA:   3'- -GCUGCUU------UGGCUCCuagaaCG-GCUGG- -5'
12808 5' -51.9 NC_003387.1 + 10030 0.78 0.300348
Target:  5'- aCGACGAGccgaagcgcGCCGAGGG-CgcggUGUCGGCCg -3'
miRNA:   3'- -GCUGCUU---------UGGCUCCUaGa---ACGGCUGG- -5'
12808 5' -51.9 NC_003387.1 + 50237 0.7 0.675899
Target:  5'- aCGGCGccuaccGGAUCGAGGAggugGCCGACg -3'
miRNA:   3'- -GCUGC------UUUGGCUCCUagaaCGGCUGg -5'
12808 5' -51.9 NC_003387.1 + 43836 0.76 0.374286
Target:  5'- gGGCGAGGCCGAGG-UCgggGCgGugCa -3'
miRNA:   3'- gCUGCUUUGGCUCCuAGaa-CGgCugG- -5'
12808 5' -51.9 NC_003387.1 + 25374 0.73 0.54337
Target:  5'- gCGGCGAggUCGAGGggCUgcggcUGCuCGACg -3'
miRNA:   3'- -GCUGCUuuGGCUCCuaGA-----ACG-GCUGg -5'
12808 5' -51.9 NC_003387.1 + 19513 0.7 0.686915
Target:  5'- gCGugGAugccAACCGGGGcaacucgCUgcUGCCGAUCg -3'
miRNA:   3'- -GCugCU----UUGGCUCCua-----GA--ACGGCUGG- -5'
12808 5' -51.9 NC_003387.1 + 30995 0.7 0.719598
Target:  5'- aGuuGggGCCGAggucaGGAUCggGCCGAgCg -3'
miRNA:   3'- gCugCuuUGGCU-----CCUAGaaCGGCUgG- -5'
12808 5' -51.9 NC_003387.1 + 41713 0.76 0.386842
Target:  5'- cCGACGAAggcggccggggcacgGCCGAGGAcgUCacccgGCUGGCCg -3'
miRNA:   3'- -GCUGCUU---------------UGGCUCCU--AGaa---CGGCUGG- -5'
12808 5' -51.9 NC_003387.1 + 44655 0.73 0.500723
Target:  5'- uCGGCGAuccuGGCCGAGGggC-UGCCGgugcucGCCa -3'
miRNA:   3'- -GCUGCU----UUGGCUCCuaGaACGGC------UGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.