Results 1 - 20 of 35 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
12817 | 3' | -57.4 | NC_003387.1 | + | 30066 | 1.08 | 0.000492 |
Target: 5'- gUUAUCAGGGCCAGCGAGCAUGCGCUCa -3' miRNA: 3'- -AAUAGUCCCGGUCGCUCGUACGCGAG- -5' |
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12817 | 3' | -57.4 | NC_003387.1 | + | 25031 | 0.74 | 0.161534 |
Target: 5'- cUGUCGGGGUCGGCGcAGCAcucGCGC-Ca -3' miRNA: 3'- aAUAGUCCCGGUCGC-UCGUa--CGCGaG- -5' |
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12817 | 3' | -57.4 | NC_003387.1 | + | 19005 | 0.74 | 0.166093 |
Target: 5'- ---aCGGGGCCAGCGAGCuaagccacUGCGUc- -3' miRNA: 3'- aauaGUCCCGGUCGCUCGu-------ACGCGag -5' |
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12817 | 3' | -57.4 | NC_003387.1 | + | 13767 | 0.73 | 0.192749 |
Target: 5'- --uUCGGGGCCGGUcGGUAuggacccggucgcgcUGCGCUCg -3' miRNA: 3'- aauAGUCCCGGUCGcUCGU---------------ACGCGAG- -5' |
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12817 | 3' | -57.4 | NC_003387.1 | + | 30995 | 0.71 | 0.262127 |
Target: 5'- -aGUUGGGGCCgaggucaggaucgGGcCGAGCGUGCGC-Cg -3' miRNA: 3'- aaUAGUCCCGG-------------UC-GCUCGUACGCGaG- -5' |
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12817 | 3' | -57.4 | NC_003387.1 | + | 7286 | 0.71 | 0.262812 |
Target: 5'- ---gCAGGcCCGGCGAGCuUGCGCa- -3' miRNA: 3'- aauaGUCCcGGUCGCUCGuACGCGag -5' |
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12817 | 3' | -57.4 | NC_003387.1 | + | 16379 | 0.69 | 0.322325 |
Target: 5'- cUAUCAGGGCCAGgcCGAcgacacGCugaugGCGUUCa -3' miRNA: 3'- aAUAGUCCCGGUC--GCU------CGua---CGCGAG- -5' |
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12817 | 3' | -57.4 | NC_003387.1 | + | 629 | 0.68 | 0.364361 |
Target: 5'- ----aGGGGCCAGUgGGGCAgGCGgUCg -3' miRNA: 3'- aauagUCCCGGUCG-CUCGUaCGCgAG- -5' |
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12817 | 3' | -57.4 | NC_003387.1 | + | 1144 | 0.68 | 0.373211 |
Target: 5'- --cUCGGcGCCuGCGuGCAUGCGCg- -3' miRNA: 3'- aauAGUCcCGGuCGCuCGUACGCGag -5' |
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12817 | 3' | -57.4 | NC_003387.1 | + | 45514 | 0.68 | 0.382205 |
Target: 5'- ----aAGGGCCgcAGCGAGCugacgGUGUGCUg -3' miRNA: 3'- aauagUCCCGG--UCGCUCG-----UACGCGAg -5' |
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12817 | 3' | -57.4 | NC_003387.1 | + | 41163 | 0.68 | 0.382205 |
Target: 5'- gUGUCAGGGCgAGUGcGGCcgGuCGCa- -3' miRNA: 3'- aAUAGUCCCGgUCGC-UCGuaC-GCGag -5' |
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12817 | 3' | -57.4 | NC_003387.1 | + | 7960 | 0.68 | 0.390423 |
Target: 5'- -gGUC-GGGCCgcuucacGGCGGGCGggugcUGCGCUUc -3' miRNA: 3'- aaUAGuCCCGG-------UCGCUCGU-----ACGCGAG- -5' |
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12817 | 3' | -57.4 | NC_003387.1 | + | 18719 | 0.68 | 0.404373 |
Target: 5'- ---cCAGGGCgcggcacucgucgagCAGCGGGCAgcgcaugcacaUGCGCUUu -3' miRNA: 3'- aauaGUCCCG---------------GUCGCUCGU-----------ACGCGAG- -5' |
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12817 | 3' | -57.4 | NC_003387.1 | + | 12220 | 0.67 | 0.419595 |
Target: 5'- ---cCGGGccaccggcggucGCCAGCGcAGCG-GCGCUCg -3' miRNA: 3'- aauaGUCC------------CGGUCGC-UCGUaCGCGAG- -5' |
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12817 | 3' | -57.4 | NC_003387.1 | + | 52177 | 0.67 | 0.429283 |
Target: 5'- -cGUCAGGGCagccagaucGCGGGCAgGUGuCUCg -3' miRNA: 3'- aaUAGUCCCGgu-------CGCUCGUaCGC-GAG- -5' |
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12817 | 3' | -57.4 | NC_003387.1 | + | 16204 | 0.67 | 0.437128 |
Target: 5'- cUGUCGGGGCuCAGCcuGCGcugccauaugccGCGCUCg -3' miRNA: 3'- aAUAGUCCCG-GUCGcuCGUa-----------CGCGAG- -5' |
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12817 | 3' | -57.4 | NC_003387.1 | + | 42463 | 0.67 | 0.449048 |
Target: 5'- --uUCGGGGCgAccuUGAGCccGCGCUCg -3' miRNA: 3'- aauAGUCCCGgUc--GCUCGuaCGCGAG- -5' |
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12817 | 3' | -57.4 | NC_003387.1 | + | 26772 | 0.67 | 0.449048 |
Target: 5'- -----cGGGUUAGCGAGCA-GCGC-Ca -3' miRNA: 3'- aauaguCCCGGUCGCUCGUaCGCGaG- -5' |
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12817 | 3' | -57.4 | NC_003387.1 | + | 16481 | 0.67 | 0.459117 |
Target: 5'- ---gCAGGG-CAGCGGGUcgGCGUa- -3' miRNA: 3'- aauaGUCCCgGUCGCUCGuaCGCGag -5' |
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12817 | 3' | -57.4 | NC_003387.1 | + | 41959 | 0.67 | 0.459117 |
Target: 5'- ---gCAGGccGCCAGCGAGgAgcUGCGCg- -3' miRNA: 3'- aauaGUCC--CGGUCGCUCgU--ACGCGag -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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