Results 1 - 20 of 35 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
12817 | 3' | -57.4 | NC_003387.1 | + | 120 | 0.66 | 0.490018 |
Target: 5'- -gGUCAGGGCguGUuugcuGAGCu--CGCUCg -3' miRNA: 3'- aaUAGUCCCGguCG-----CUCGuacGCGAG- -5' |
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12817 | 3' | -57.4 | NC_003387.1 | + | 629 | 0.68 | 0.364361 |
Target: 5'- ----aGGGGCCAGUgGGGCAgGCGgUCg -3' miRNA: 3'- aauagUCCCGGUCG-CUCGUaCGCgAG- -5' |
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12817 | 3' | -57.4 | NC_003387.1 | + | 1144 | 0.68 | 0.373211 |
Target: 5'- --cUCGGcGCCuGCGuGCAUGCGCg- -3' miRNA: 3'- aauAGUCcCGGuCGCuCGUACGCGag -5' |
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12817 | 3' | -57.4 | NC_003387.1 | + | 1379 | 0.66 | 0.479607 |
Target: 5'- -cGUCGGcGCuCAGCGGGUcgggGUcGCGCUCg -3' miRNA: 3'- aaUAGUCcCG-GUCGCUCG----UA-CGCGAG- -5' |
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12817 | 3' | -57.4 | NC_003387.1 | + | 2983 | 0.66 | 0.500534 |
Target: 5'- --cUCGGGGCCucGCGAGgc-GCuGCUCg -3' miRNA: 3'- aauAGUCCCGGu-CGCUCguaCG-CGAG- -5' |
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12817 | 3' | -57.4 | NC_003387.1 | + | 3606 | 0.66 | 0.512215 |
Target: 5'- --uUCAGGGCguccuggccgagcugAGCGGGCGUGCGgguaUCg -3' miRNA: 3'- aauAGUCCCGg--------------UCGCUCGUACGCg---AG- -5' |
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12817 | 3' | -57.4 | NC_003387.1 | + | 7286 | 0.71 | 0.262812 |
Target: 5'- ---gCAGGcCCGGCGAGCuUGCGCa- -3' miRNA: 3'- aauaGUCCcGGUCGCUCGuACGCGag -5' |
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12817 | 3' | -57.4 | NC_003387.1 | + | 7960 | 0.68 | 0.390423 |
Target: 5'- -gGUC-GGGCCgcuucacGGCGGGCGggugcUGCGCUUc -3' miRNA: 3'- aaUAGuCCCGG-------UCGCUCGU-----ACGCGAG- -5' |
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12817 | 3' | -57.4 | NC_003387.1 | + | 8407 | 0.66 | 0.500534 |
Target: 5'- gUGUCGGGGCCucGCcGGUgcGCGCg- -3' miRNA: 3'- aAUAGUCCCGGu-CGcUCGuaCGCGag -5' |
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12817 | 3' | -57.4 | NC_003387.1 | + | 12220 | 0.67 | 0.419595 |
Target: 5'- ---cCGGGccaccggcggucGCCAGCGcAGCG-GCGCUCg -3' miRNA: 3'- aauaGUCC------------CGGUCGC-UCGUaCGCGAG- -5' |
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12817 | 3' | -57.4 | NC_003387.1 | + | 13767 | 0.73 | 0.192749 |
Target: 5'- --uUCGGGGCCGGUcGGUAuggacccggucgcgcUGCGCUCg -3' miRNA: 3'- aauAGUCCCGGUCGcUCGU---------------ACGCGAG- -5' |
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12817 | 3' | -57.4 | NC_003387.1 | + | 14641 | 0.66 | 0.531565 |
Target: 5'- -cGUCAGGccgccgcGCaCAGUGAcGCG-GCGCUCg -3' miRNA: 3'- aaUAGUCC-------CG-GUCGCU-CGUaCGCGAG- -5' |
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12817 | 3' | -57.4 | NC_003387.1 | + | 16204 | 0.67 | 0.437128 |
Target: 5'- cUGUCGGGGCuCAGCcuGCGcugccauaugccGCGCUCg -3' miRNA: 3'- aAUAGUCCCG-GUCGcuCGUa-----------CGCGAG- -5' |
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12817 | 3' | -57.4 | NC_003387.1 | + | 16379 | 0.69 | 0.322325 |
Target: 5'- cUAUCAGGGCCAGgcCGAcgacacGCugaugGCGUUCa -3' miRNA: 3'- aAUAGUCCCGGUC--GCU------CGua---CGCGAG- -5' |
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12817 | 3' | -57.4 | NC_003387.1 | + | 16481 | 0.67 | 0.459117 |
Target: 5'- ---gCAGGG-CAGCGGGUcgGCGUa- -3' miRNA: 3'- aauaGUCCCgGUCGCUCGuaCGCGag -5' |
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12817 | 3' | -57.4 | NC_003387.1 | + | 18499 | 0.67 | 0.469304 |
Target: 5'- ----gAGGGCCuGC-AGCAUGCuCUCg -3' miRNA: 3'- aauagUCCCGGuCGcUCGUACGcGAG- -5' |
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12817 | 3' | -57.4 | NC_003387.1 | + | 18719 | 0.68 | 0.404373 |
Target: 5'- ---cCAGGGCgcggcacucgucgagCAGCGGGCAgcgcaugcacaUGCGCUUu -3' miRNA: 3'- aauaGUCCCG---------------GUCGCUCGU-----------ACGCGAG- -5' |
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12817 | 3' | -57.4 | NC_003387.1 | + | 19005 | 0.74 | 0.166093 |
Target: 5'- ---aCGGGGCCAGCGAGCuaagccacUGCGUc- -3' miRNA: 3'- aauaGUCCCGGUCGCUCGu-------ACGCGag -5' |
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12817 | 3' | -57.4 | NC_003387.1 | + | 21299 | 0.66 | 0.511149 |
Target: 5'- -cGUCGaGGCCGuCGAGCAgugGCGCg- -3' miRNA: 3'- aaUAGUcCCGGUcGCUCGUa--CGCGag -5' |
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12817 | 3' | -57.4 | NC_003387.1 | + | 25031 | 0.74 | 0.161534 |
Target: 5'- cUGUCGGGGUCGGCGcAGCAcucGCGC-Ca -3' miRNA: 3'- aAUAGUCCCGGUCGC-UCGUa--CGCGaG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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