miRNA display CGI


Results 1 - 5 of 5 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1282 5' -55.8 NC_001317.1 + 16830 0.66 0.461515
Target:  5'- cAUCAGCUcGGAGCGC--UGGCGcuguACCg -3'
miRNA:   3'- -UAGUCGGuCUUCGCGuaGCCGU----UGGa -5'
1282 5' -55.8 NC_001317.1 + 19899 0.66 0.472181
Target:  5'- gGUCAGCCAGucgGGUcagaaauacgGCGUCGGacuCCUg -3'
miRNA:   3'- -UAGUCGGUCu--UCG----------CGUAGCCguuGGA- -5'
1282 5' -55.8 NC_001317.1 + 665 0.67 0.420182
Target:  5'- uUCAGCCAGGcggaauuaAGCGCGcugagauauUCGGgcaGGCCg -3'
miRNA:   3'- uAGUCGGUCU--------UCGCGU---------AGCCg--UUGGa -5'
1282 5' -55.8 NC_001317.1 + 6943 0.67 0.410203
Target:  5'- ---uGCgCAGgcGCGCAUCGGaAACCg -3'
miRNA:   3'- uaguCG-GUCuuCGCGUAGCCgUUGGa -5'
1282 5' -55.8 NC_001317.1 + 5612 1.06 0.000482
Target:  5'- cAUCAGCCAGAAGCGCAUCGGCAACCUg -3'
miRNA:   3'- -UAGUCGGUCUUCGCGUAGCCGUUGGA- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.