Results 21 - 40 of 50 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
12820 | 3' | -62.4 | NC_003387.1 | + | 33584 | 0.67 | 0.281732 |
Target: 5'- uGAGCGCGUGCGCGACGaagaUCccGCCGaGGUg -3' miRNA: 3'- -CUCGCGUGCGCGCUGC----AGc-CGGC-CUA- -5' |
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12820 | 3' | -62.4 | NC_003387.1 | + | 3627 | 0.66 | 0.347795 |
Target: 5'- uGAGCGgGCGUGCGGguaucgcCGUCGaCCGGc- -3' miRNA: 3'- -CUCGCgUGCGCGCU-------GCAGCcGGCCua -5' |
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12820 | 3' | -62.4 | NC_003387.1 | + | 27457 | 1.06 | 0.000343 |
Target: 5'- cGAGCGCACGCGCGACGUCGGCCGGAUa -3' miRNA: 3'- -CUCGCGUGCGCGCUGCAGCCGGCCUA- -5' |
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12820 | 3' | -62.4 | NC_003387.1 | + | 31259 | 0.66 | 0.340637 |
Target: 5'- cGGCGCGgGCuGCGccaGCGg-GGCCGGGUu -3' miRNA: 3'- cUCGCGUgCG-CGC---UGCagCCGGCCUA- -5' |
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12820 | 3' | -62.4 | NC_003387.1 | + | 36779 | 0.73 | 0.107942 |
Target: 5'- --aUGCAgGCGCGA-GUCGGCCGGGc -3' miRNA: 3'- cucGCGUgCGCGCUgCAGCCGGCCUa -5' |
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12820 | 3' | -62.4 | NC_003387.1 | + | 22443 | 0.71 | 0.15294 |
Target: 5'- aGGCGCGgGcCGCGGCGUUGGCCu--- -3' miRNA: 3'- cUCGCGUgC-GCGCUGCAGCCGGccua -5' |
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12820 | 3' | -62.4 | NC_003387.1 | + | 15988 | 0.7 | 0.188527 |
Target: 5'- aGGCGCuCGCaGaCGGCGUCgaGGCCGGGc -3' miRNA: 3'- cUCGCGuGCG-C-GCUGCAG--CCGGCCUa -5' |
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12820 | 3' | -62.4 | NC_003387.1 | + | 38091 | 0.66 | 0.348597 |
Target: 5'- cGGCcuuGCccuuCGCGUacACGUCGGCCGGGUu -3' miRNA: 3'- cUCG---CGu---GCGCGc-UGCAGCCGGCCUA- -5' |
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12820 | 3' | -62.4 | NC_003387.1 | + | 48600 | 0.66 | 0.340637 |
Target: 5'- uGAaCGCA-GCGCGGUGUCGGCCGa-- -3' miRNA: 3'- -CUcGCGUgCGCGCUGCAGCCGGCcua -5' |
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12820 | 3' | -62.4 | NC_003387.1 | + | 4978 | 0.66 | 0.31755 |
Target: 5'- -cGUGCuCGCGCaGAgGUCGGUCGcGAUu -3' miRNA: 3'- cuCGCGuGCGCG-CUgCAGCCGGC-CUA- -5' |
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12820 | 3' | -62.4 | NC_003387.1 | + | 11347 | 0.67 | 0.310121 |
Target: 5'- cGGCGCucggccucACGCuCGGCGUCGGCCu--- -3' miRNA: 3'- cUCGCG--------UGCGcGCUGCAGCCGGccua -5' |
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12820 | 3' | -62.4 | NC_003387.1 | + | 44020 | 0.67 | 0.281731 |
Target: 5'- cGAGCG-GCuCGuCGACGUCGGUCGGc- -3' miRNA: 3'- -CUCGCgUGcGC-GCUGCAGCCGGCCua -5' |
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12820 | 3' | -62.4 | NC_003387.1 | + | 14519 | 0.68 | 0.268327 |
Target: 5'- -uGCGCcuGCGUGCGGuacuCGgCGGCCGGGc -3' miRNA: 3'- cuCGCG--UGCGCGCU----GCaGCCGGCCUa -5' |
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12820 | 3' | -62.4 | NC_003387.1 | + | 20511 | 0.68 | 0.268327 |
Target: 5'- -cGCGCA-GCGCGGCGUCGcgcucGUCGGu- -3' miRNA: 3'- cuCGCGUgCGCGCUGCAGC-----CGGCCua -5' |
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12820 | 3' | -62.4 | NC_003387.1 | + | 30036 | 0.68 | 0.26182 |
Target: 5'- aGGCGCACGUGCuACGaaacccgcUCGGCCGu-- -3' miRNA: 3'- cUCGCGUGCGCGcUGC--------AGCCGGCcua -5' |
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12820 | 3' | -62.4 | NC_003387.1 | + | 44381 | 0.68 | 0.242464 |
Target: 5'- cAGCgGCACGUcggggucGuCGAgGUCGGCCGGGc -3' miRNA: 3'- cUCG-CGUGCG-------C-GCUgCAGCCGGCCUa -5' |
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12820 | 3' | -62.4 | NC_003387.1 | + | 8284 | 0.69 | 0.219822 |
Target: 5'- cAGCGCcuCGUGCG-CGUCGGCgGGc- -3' miRNA: 3'- cUCGCGu-GCGCGCuGCAGCCGgCCua -5' |
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12820 | 3' | -62.4 | NC_003387.1 | + | 39081 | 0.69 | 0.214314 |
Target: 5'- cGAGcCGC-CGC-CGACGgUGGCCGGGUu -3' miRNA: 3'- -CUC-GCGuGCGcGCUGCaGCCGGCCUA- -5' |
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12820 | 3' | -62.4 | NC_003387.1 | + | 17779 | 0.69 | 0.208925 |
Target: 5'- cGAGCuuGCGCaGCGGCa-CGGCCGGGa -3' miRNA: 3'- -CUCGcgUGCG-CGCUGcaGCCGGCCUa -5' |
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12820 | 3' | -62.4 | NC_003387.1 | + | 20809 | 0.7 | 0.198498 |
Target: 5'- uGAGCcaccgcucggaGCAggggauacguCGCGCGACGUCGGCgaCGGGa -3' miRNA: 3'- -CUCG-----------CGU----------GCGCGCUGCAGCCG--GCCUa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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