miRNA display CGI


Results 1 - 20 of 50 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12820 3' -62.4 NC_003387.1 + 10041 0.77 0.05888
Target:  5'- aAGCGCGCcgaggGCGCGGUGUCGGCCGGu- -3'
miRNA:   3'- cUCGCGUG-----CGCGCUGCAGCCGGCCua -5'
12820 3' -62.4 NC_003387.1 + 48195 0.66 0.35669
Target:  5'- aGGUGCcCGCaccgGCGGCGgCGGCCGaGGUg -3'
miRNA:   3'- cUCGCGuGCG----CGCUGCaGCCGGC-CUA- -5'
12820 3' -62.4 NC_003387.1 + 21471 0.66 0.364914
Target:  5'- uGGCGCAgccCGCGCcg-GUCGGgCCGGGc -3'
miRNA:   3'- cUCGCGU---GCGCGcugCAGCC-GGCCUa -5'
12820 3' -62.4 NC_003387.1 + 19331 0.66 0.364914
Target:  5'- cAGCGaCGaGCGCGGCGagaaccUGGCCGGGc -3'
miRNA:   3'- cUCGC-GUgCGCGCUGCa-----GCCGGCCUa -5'
12820 3' -62.4 NC_003387.1 + 18602 0.7 0.193456
Target:  5'- -cGCGCAC-CGCGACGUCGacGCCGccGAUc -3'
miRNA:   3'- cuCGCGUGcGCGCUGCAGC--CGGC--CUA- -5'
12820 3' -62.4 NC_003387.1 + 6497 0.69 0.203654
Target:  5'- cGGGC-CGCGaaggcaGUuGCGUCGGCCGGGUg -3'
miRNA:   3'- -CUCGcGUGCg-----CGcUGCAGCCGGCCUA- -5'
12820 3' -62.4 NC_003387.1 + 49175 0.68 0.26182
Target:  5'- aGGCGguCGCGCaGGCGgCGGCCGu-- -3'
miRNA:   3'- cUCGCguGCGCG-CUGCaGCCGGCcua -5'
12820 3' -62.4 NC_003387.1 + 33584 0.67 0.281732
Target:  5'- uGAGCGCGUGCGCGACGaagaUCccGCCGaGGUg -3'
miRNA:   3'- -CUCGCGUGCGCGCUGC----AGc-CGGC-CUA- -5'
12820 3' -62.4 NC_003387.1 + 12273 0.66 0.332808
Target:  5'- -cGCGCcUG-GCGACcggCGGCCGGAUc -3'
miRNA:   3'- cuCGCGuGCgCGCUGca-GCCGGCCUA- -5'
12820 3' -62.4 NC_003387.1 + 23656 0.66 0.351819
Target:  5'- cAGCGC-CGCgacgcaguuuaugacGCGGCucaaggCGGCCGGAUa -3'
miRNA:   3'- cUCGCGuGCG---------------CGCUGca----GCCGGCCUA- -5'
12820 3' -62.4 NC_003387.1 + 32230 0.66 0.340637
Target:  5'- -uGCGCGaGCGCGACGagcUGGCCGa-- -3'
miRNA:   3'- cuCGCGUgCGCGCUGCa--GCCGGCcua -5'
12820 3' -62.4 NC_003387.1 + 31021 0.67 0.28863
Target:  5'- cGAGCGUGCGcCGgGGCGgCGGCCa--- -3'
miRNA:   3'- -CUCGCGUGC-GCgCUGCaGCCGGccua -5'
12820 3' -62.4 NC_003387.1 + 37106 0.76 0.065814
Target:  5'- -cGCGCccucgACGUGCucGACGUCGGCCGGGc -3'
miRNA:   3'- cuCGCG-----UGCGCG--CUGCAGCCGGCCUa -5'
12820 3' -62.4 NC_003387.1 + 3627 0.66 0.347795
Target:  5'- uGAGCGgGCGUGCGGguaucgcCGUCGaCCGGc- -3'
miRNA:   3'- -CUCGCgUGCGCGCU-------GCAGCcGGCCua -5'
12820 3' -62.4 NC_003387.1 + 41700 0.7 0.169902
Target:  5'- cGGCGuCGCgGCGcCGACGaaggCGGCCGGGg -3'
miRNA:   3'- cUCGC-GUG-CGC-GCUGCa---GCCGGCCUa -5'
12820 3' -62.4 NC_003387.1 + 47794 0.67 0.281732
Target:  5'- --uCGacaACGCGCGACGcCGcGCCGGGc -3'
miRNA:   3'- cucGCg--UGCGCGCUGCaGC-CGGCCUa -5'
12820 3' -62.4 NC_003387.1 + 1294 0.66 0.348597
Target:  5'- -uGCGCcucgacgcccugGCGgGCGACGUCGacgacGUCGGGUa -3'
miRNA:   3'- cuCGCG------------UGCgCGCUGCAGC-----CGGCCUA- -5'
12820 3' -62.4 NC_003387.1 + 50438 0.66 0.35669
Target:  5'- cGGCGUACGCcagcgaggaCGACGUCGaGCCGa-- -3'
miRNA:   3'- cUCGCGUGCGc--------GCUGCAGC-CGGCcua -5'
12820 3' -62.4 NC_003387.1 + 37284 0.7 0.174398
Target:  5'- aGGCGcCugGCGCGcuCGUCGGCgCGGu- -3'
miRNA:   3'- cUCGC-GugCGCGCu-GCAGCCG-GCCua -5'
12820 3' -62.4 NC_003387.1 + 43113 0.68 0.255443
Target:  5'- cGAGCGCGacgGCGCGGCGccgCGGUggUGGGc -3'
miRNA:   3'- -CUCGCGUg--CGCGCUGCa--GCCG--GCCUa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.