miRNA display CGI


Results 1 - 20 of 50 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12820 3' -62.4 NC_003387.1 + 27457 1.06 0.000343
Target:  5'- cGAGCGCACGCGCGACGUCGGCCGGAUa -3'
miRNA:   3'- -CUCGCGUGCGCGCUGCAGCCGGCCUA- -5'
12820 3' -62.4 NC_003387.1 + 10041 0.77 0.05888
Target:  5'- aAGCGCGCcgaggGCGCGGUGUCGGCCGGu- -3'
miRNA:   3'- cUCGCGUG-----CGCGCUGCAGCCGGCCua -5'
12820 3' -62.4 NC_003387.1 + 37106 0.76 0.065814
Target:  5'- -cGCGCccucgACGUGCucGACGUCGGCCGGGc -3'
miRNA:   3'- cuCGCG-----UGCGCG--CUGCAGCCGGCCUa -5'
12820 3' -62.4 NC_003387.1 + 36779 0.73 0.107942
Target:  5'- --aUGCAgGCGCGA-GUCGGCCGGGc -3'
miRNA:   3'- cucGCGUgCGCGCUgCAGCCGGCCUa -5'
12820 3' -62.4 NC_003387.1 + 22443 0.71 0.15294
Target:  5'- aGGCGCGgGcCGCGGCGUUGGCCu--- -3'
miRNA:   3'- cUCGCGUgC-GCGCUGCAGCCGGccua -5'
12820 3' -62.4 NC_003387.1 + 41700 0.7 0.169902
Target:  5'- cGGCGuCGCgGCGcCGACGaaggCGGCCGGGg -3'
miRNA:   3'- cUCGC-GUG-CGC-GCUGCa---GCCGGCCUa -5'
12820 3' -62.4 NC_003387.1 + 37284 0.7 0.174398
Target:  5'- aGGCGcCugGCGCGcuCGUCGGCgCGGu- -3'
miRNA:   3'- cUCGC-GugCGCGCu-GCAGCCG-GCCua -5'
12820 3' -62.4 NC_003387.1 + 15988 0.7 0.188527
Target:  5'- aGGCGCuCGCaGaCGGCGUCgaGGCCGGGc -3'
miRNA:   3'- cUCGCGuGCG-C-GCUGCAG--CCGGCCUa -5'
12820 3' -62.4 NC_003387.1 + 18602 0.7 0.193456
Target:  5'- -cGCGCAC-CGCGACGUCGacGCCGccGAUc -3'
miRNA:   3'- cuCGCGUGcGCGCUGCAGC--CGGC--CUA- -5'
12820 3' -62.4 NC_003387.1 + 20809 0.7 0.198498
Target:  5'- uGAGCcaccgcucggaGCAggggauacguCGCGCGACGUCGGCgaCGGGa -3'
miRNA:   3'- -CUCG-----------CGU----------GCGCGCUGCAGCCG--GCCUa -5'
12820 3' -62.4 NC_003387.1 + 6497 0.69 0.203654
Target:  5'- cGGGC-CGCGaaggcaGUuGCGUCGGCCGGGUg -3'
miRNA:   3'- -CUCGcGUGCg-----CGcUGCAGCCGGCCUA- -5'
12820 3' -62.4 NC_003387.1 + 17779 0.69 0.208925
Target:  5'- cGAGCuuGCGCaGCGGCa-CGGCCGGGa -3'
miRNA:   3'- -CUCGcgUGCG-CGCUGcaGCCGGCCUa -5'
12820 3' -62.4 NC_003387.1 + 39081 0.69 0.214314
Target:  5'- cGAGcCGC-CGC-CGACGgUGGCCGGGUu -3'
miRNA:   3'- -CUC-GCGuGCGcGCUGCaGCCGGCCUA- -5'
12820 3' -62.4 NC_003387.1 + 8284 0.69 0.219822
Target:  5'- cAGCGCcuCGUGCG-CGUCGGCgGGc- -3'
miRNA:   3'- cUCGCGu-GCGCGCuGCAGCCGgCCua -5'
12820 3' -62.4 NC_003387.1 + 44381 0.68 0.242464
Target:  5'- cAGCgGCACGUcggggucGuCGAgGUCGGCCGGGc -3'
miRNA:   3'- cUCG-CGUGCG-------C-GCUgCAGCCGGCCUa -5'
12820 3' -62.4 NC_003387.1 + 22509 0.68 0.24307
Target:  5'- cGGCgGCGCGCuCGACGUCGGCguacCGGc- -3'
miRNA:   3'- cUCG-CGUGCGcGCUGCAGCCG----GCCua -5'
12820 3' -62.4 NC_003387.1 + 20217 0.68 0.249193
Target:  5'- -cGUGCACGCaGCGGCaGUCGucgcaccacggcGCCGGGg -3'
miRNA:   3'- cuCGCGUGCG-CGCUG-CAGC------------CGGCCUa -5'
12820 3' -62.4 NC_003387.1 + 17518 0.68 0.249193
Target:  5'- cGGCcaGCAUGCGCaGCGgcUCGGCCGGu- -3'
miRNA:   3'- cUCG--CGUGCGCGcUGC--AGCCGGCCua -5'
12820 3' -62.4 NC_003387.1 + 43113 0.68 0.255443
Target:  5'- cGAGCGCGacgGCGCGGCGccgCGGUggUGGGc -3'
miRNA:   3'- -CUCGCGUg--CGCGCUGCa--GCCG--GCCUa -5'
12820 3' -62.4 NC_003387.1 + 52235 0.68 0.255443
Target:  5'- cGGGCGCGCauCGCGACGagcagcUCGcGCCGGu- -3'
miRNA:   3'- -CUCGCGUGc-GCGCUGC------AGC-CGGCCua -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.