miRNA display CGI


Results 1 - 20 of 119 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12827 3' -62.9 NC_003387.1 + 25211 1.11 0.000149
Target:  5'- uCGCGGCGGCGGCCGGAUCUUCGCGCCa -3'
miRNA:   3'- -GCGCCGCCGCCGGCCUAGAAGCGCGG- -5'
12827 3' -62.9 NC_003387.1 + 48208 0.89 0.007726
Target:  5'- gGCGGCGGCGGCCGaggugacccgcacGAUCgugUCGCGCCc -3'
miRNA:   3'- gCGCCGCCGCCGGC-------------CUAGa--AGCGCGG- -5'
12827 3' -62.9 NC_003387.1 + 27539 0.83 0.021877
Target:  5'- cCGCGGCGGCGgcGCCGGggCcacCGCGCCg -3'
miRNA:   3'- -GCGCCGCCGC--CGGCCuaGaa-GCGCGG- -5'
12827 3' -62.9 NC_003387.1 + 1693 0.81 0.030568
Target:  5'- cCGCGGCGGCGGUCgacuGGAUCgcugagCGgGCCg -3'
miRNA:   3'- -GCGCCGCCGCCGG----CCUAGaa----GCgCGG- -5'
12827 3' -62.9 NC_003387.1 + 12280 0.81 0.032316
Target:  5'- gGCGacCGGCGGCCGGAUCagCGgGCCg -3'
miRNA:   3'- gCGCc-GCCGCCGGCCUAGaaGCgCGG- -5'
12827 3' -62.9 NC_003387.1 + 39036 0.8 0.038169
Target:  5'- cCGUGGUGGCGGCCGG-UCgacgacUCGUGCUu -3'
miRNA:   3'- -GCGCCGCCGCCGGCCuAGa-----AGCGCGG- -5'
12827 3' -62.9 NC_003387.1 + 21660 0.79 0.040342
Target:  5'- cCGCGGCGGCGGCCGaGcacGUgUUCGCcgacGCCc -3'
miRNA:   3'- -GCGCCGCCGCCGGC-C---UAgAAGCG----CGG- -5'
12827 3' -62.9 NC_003387.1 + 48804 0.78 0.054635
Target:  5'- cCGCGGCGGCGGCC--AUCgUCcCGCCg -3'
miRNA:   3'- -GCGCCGCCGCCGGccUAGaAGcGCGG- -5'
12827 3' -62.9 NC_003387.1 + 49198 0.76 0.073795
Target:  5'- uGgGGCGGCGGCgGGGgcaCUg-GCGCCg -3'
miRNA:   3'- gCgCCGCCGCCGgCCUa--GAagCGCGG- -5'
12827 3' -62.9 NC_003387.1 + 14529 0.76 0.075827
Target:  5'- uGCGGUacucGGCGGCCGGGcCgUUGCGCUu -3'
miRNA:   3'- gCGCCG----CCGCCGGCCUaGaAGCGCGG- -5'
12827 3' -62.9 NC_003387.1 + 42039 0.75 0.082249
Target:  5'- gGCGGCcaccgccgaGGCGGCCGuGGUCgcagcCGCGUCg -3'
miRNA:   3'- gCGCCG---------CCGCCGGC-CUAGaa---GCGCGG- -5'
12827 3' -62.9 NC_003387.1 + 23678 0.75 0.084503
Target:  5'- aCGCGGCucaaGGCGGCCGGAUacaaCGCGa- -3'
miRNA:   3'- -GCGCCG----CCGCCGGCCUAgaa-GCGCgg -5'
12827 3' -62.9 NC_003387.1 + 13649 0.75 0.084503
Target:  5'- cCGuCGGCGGCGGCUcGGUCgccgaggGCGCCg -3'
miRNA:   3'- -GC-GCCGCCGCCGGcCUAGaag----CGCGG- -5'
12827 3' -62.9 NC_003387.1 + 23394 0.75 0.086816
Target:  5'- gCGCGGCGGCuuucagcgcGGCCuGGcgC-UCGUGCCc -3'
miRNA:   3'- -GCGCCGCCG---------CCGG-CCuaGaAGCGCGG- -5'
12827 3' -62.9 NC_003387.1 + 22175 0.75 0.086816
Target:  5'- cCGCGGCGGCGGUCcauGUCgggGCGCCc -3'
miRNA:   3'- -GCGCCGCCGCCGGcc-UAGaagCGCGG- -5'
12827 3' -62.9 NC_003387.1 + 18309 0.74 0.094121
Target:  5'- cCGCGGCGGUGGCgcccggcaaCGGcgUggccgUCGUGCCc -3'
miRNA:   3'- -GCGCCGCCGCCG---------GCCuaGa----AGCGCGG- -5'
12827 3' -62.9 NC_003387.1 + 24836 0.74 0.096424
Target:  5'- uCG-GGCGGCuGGCCGGGcuccugcUCgacCGCGCCg -3'
miRNA:   3'- -GCgCCGCCG-CCGGCCU-------AGaa-GCGCGG- -5'
12827 3' -62.9 NC_003387.1 + 42149 0.74 0.096424
Target:  5'- gGCGGCGGUGGCCcgcugucgaucgaGGAgCUgaccgaGCGCCu -3'
miRNA:   3'- gCGCCGCCGCCGG-------------CCUaGAag----CGCGG- -5'
12827 3' -62.9 NC_003387.1 + 7081 0.73 0.11051
Target:  5'- gGCGccaGGCGGCC-GAUCUUCGCcucGCCg -3'
miRNA:   3'- gCGCcg-CCGCCGGcCUAGAAGCG---CGG- -5'
12827 3' -62.9 NC_003387.1 + 5835 0.73 0.113489
Target:  5'- gGCGGCGGCGGCCucaaGUCcg-GUGCCa -3'
miRNA:   3'- gCGCCGCCGCCGGcc--UAGaagCGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.