miRNA display CGI


Results 1 - 20 of 119 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12827 3' -62.9 NC_003387.1 + 349 0.68 0.254808
Target:  5'- cCGCGuGCGcGCGGUC-GAUCUgcgcgagcgguucCGCGCCc -3'
miRNA:   3'- -GCGC-CGC-CGCCGGcCUAGAa------------GCGCGG- -5'
12827 3' -62.9 NC_003387.1 + 460 0.68 0.270025
Target:  5'- cCGCGGCGGCcgacGGCgacCGGcgcgagcugcucGUCgcgaugCGCGCCc -3'
miRNA:   3'- -GCGCCGCCG----CCG---GCC------------UAGaa----GCGCGG- -5'
12827 3' -62.9 NC_003387.1 + 879 0.66 0.373384
Target:  5'- cCGCGGCaGCGacGCCggucaGGAUCUUCuGCaGCa -3'
miRNA:   3'- -GCGCCGcCGC--CGG-----CCUAGAAG-CG-CGg -5'
12827 3' -62.9 NC_003387.1 + 1693 0.81 0.030568
Target:  5'- cCGCGGCGGCGGUCgacuGGAUCgcugagCGgGCCg -3'
miRNA:   3'- -GCGCCGCCGCCGG----CCUAGaa----GCgCGG- -5'
12827 3' -62.9 NC_003387.1 + 2059 0.69 0.239125
Target:  5'- cCGCGGUGGCGGCgccAUgUUCGUGUg -3'
miRNA:   3'- -GCGCCGCCGCCGgccUAgAAGCGCGg -5'
12827 3' -62.9 NC_003387.1 + 4372 0.69 0.239125
Target:  5'- gCGCGcuCGGCGGCCaGGUgCUccugauacUCGCGCUc -3'
miRNA:   3'- -GCGCc-GCCGCCGGcCUA-GA--------AGCGCGG- -5'
12827 3' -62.9 NC_003387.1 + 5322 0.7 0.200889
Target:  5'- uCGgGGCGG-GGCCGGuugCccCGCGCUu -3'
miRNA:   3'- -GCgCCGCCgCCGGCCua-GaaGCGCGG- -5'
12827 3' -62.9 NC_003387.1 + 5696 0.7 0.195882
Target:  5'- gGUGGCGGCGGUCaagGGcgUgccCGCGUCg -3'
miRNA:   3'- gCGCCGCCGCCGG---CCuaGaa-GCGCGG- -5'
12827 3' -62.9 NC_003387.1 + 5835 0.73 0.113489
Target:  5'- gGCGGCGGCGGCCucaaGUCcg-GUGCCa -3'
miRNA:   3'- gCGCCGCCGCCGGcc--UAGaagCGCGG- -5'
12827 3' -62.9 NC_003387.1 + 6125 0.68 0.276577
Target:  5'- gCGCGGCaGCGGCUuGAgg---GCGCCa -3'
miRNA:   3'- -GCGCCGcCGCCGGcCUagaagCGCGG- -5'
12827 3' -62.9 NC_003387.1 + 6858 0.7 0.208086
Target:  5'- cCGCGGCGcGCaGCCgcagcagcucgcgcaGGAUCUcCGCGgCg -3'
miRNA:   3'- -GCGCCGC-CGcCGG---------------CCUAGAaGCGCgG- -5'
12827 3' -62.9 NC_003387.1 + 6951 0.69 0.239125
Target:  5'- gCGCaGCGGCGGgCaGGcgCcacagCGCGCCc -3'
miRNA:   3'- -GCGcCGCCGCCgG-CCuaGaa---GCGCGG- -5'
12827 3' -62.9 NC_003387.1 + 7081 0.73 0.11051
Target:  5'- gGCGccaGGCGGCC-GAUCUUCGCcucGCCg -3'
miRNA:   3'- gCGCcg-CCGCCGGcCUAGAAGCG---CGG- -5'
12827 3' -62.9 NC_003387.1 + 7400 0.7 0.190501
Target:  5'- -uCGGCcGCGGCCGGGUCUUgcuggcaaacgucCGaaaGCCa -3'
miRNA:   3'- gcGCCGcCGCCGGCCUAGAA-------------GCg--CGG- -5'
12827 3' -62.9 NC_003387.1 + 7757 0.68 0.285964
Target:  5'- aGCGGCGaucgcggccugagccGCGGCCuGAgcCUUCgcgaGCGCCu -3'
miRNA:   3'- gCGCCGC---------------CGCCGGcCUa-GAAG----CGCGG- -5'
12827 3' -62.9 NC_003387.1 + 7802 0.68 0.247467
Target:  5'- uGCaGGCcgagcugcaacgccuGGCGGCCGaGGUCgcccggCGCGCa -3'
miRNA:   3'- gCG-CCG---------------CCGCCGGC-CUAGaa----GCGCGg -5'
12827 3' -62.9 NC_003387.1 + 8085 0.66 0.365172
Target:  5'- uCGCcgaGGCcGCGGCCaGGGccacacgC-UCGCGCCa -3'
miRNA:   3'- -GCG---CCGcCGCCGG-CCUa------GaAGCGCGG- -5'
12827 3' -62.9 NC_003387.1 + 8784 0.72 0.128523
Target:  5'- uGCGGCGGCGGgCGac-CUgauucccgcucagcUCGCGCCc -3'
miRNA:   3'- gCGCCGCCGCCgGCcuaGA--------------AGCGCGG- -5'
12827 3' -62.9 NC_003387.1 + 10054 0.68 0.283257
Target:  5'- gCGCGGUGuCGGCCGGuAUCacggCgGCGaCCa -3'
miRNA:   3'- -GCGCCGCcGCCGGCC-UAGaa--G-CGC-GG- -5'
12827 3' -62.9 NC_003387.1 + 10432 0.7 0.195882
Target:  5'- uCGCGGCuGuCGGCgGGcAUCgacagCGCGCUg -3'
miRNA:   3'- -GCGCCGcC-GCCGgCC-UAGaa---GCGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.