miRNA display CGI


Results 21 - 40 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12830 3' -60.6 NC_003387.1 + 19359 0.74 0.120196
Target:  5'- gGGCGGGCUcuggUUGcCACGCCUGCGGg -3'
miRNA:   3'- gCCGUCCGAcua-GAC-GUGCGGGCGCU- -5'
12830 3' -60.6 NC_003387.1 + 19515 0.66 0.441055
Target:  5'- cCGaGCGGGCcucgcgcuUGcgCUGCGCGaUCCGCa- -3'
miRNA:   3'- -GC-CGUCCG--------ACuaGACGUGC-GGGCGcu -5'
12830 3' -60.6 NC_003387.1 + 19637 0.68 0.328642
Target:  5'- aCGGCGGGCgacgCgGuUACGCUCGCGGc -3'
miRNA:   3'- -GCCGUCCGacuaGaC-GUGCGGGCGCU- -5'
12830 3' -60.6 NC_003387.1 + 20178 0.67 0.352611
Target:  5'- gGGCGcGGUUGAUgcgCUGCuGCGCCuCGCa- -3'
miRNA:   3'- gCCGU-CCGACUA---GACG-UGCGG-GCGcu -5'
12830 3' -60.6 NC_003387.1 + 21954 0.69 0.277478
Target:  5'- gCGGCAGGCgucugcgGcgCUGUucaacuacgguGCGCCCgGUGAu -3'
miRNA:   3'- -GCCGUCCGa------CuaGACG-----------UGCGGG-CGCU- -5'
12830 3' -60.6 NC_003387.1 + 22565 0.76 0.083978
Target:  5'- gGcGCAGGCaGAUaacccGCACGCCCGCGGg -3'
miRNA:   3'- gC-CGUCCGaCUAga---CGUGCGGGCGCU- -5'
12830 3' -60.6 NC_003387.1 + 23980 0.69 0.251204
Target:  5'- gGGC-GGCUGGUUgUGCAcCGCCUGCu- -3'
miRNA:   3'- gCCGuCCGACUAG-ACGU-GCGGGCGcu -5'
12830 3' -60.6 NC_003387.1 + 24399 1.08 0.00031
Target:  5'- cCGGCAGGCUGAUCUGCACGCCCGCGAu -3'
miRNA:   3'- -GCCGUCCGACUAGACGUGCGGGCGCU- -5'
12830 3' -60.6 NC_003387.1 + 24578 0.7 0.244965
Target:  5'- uGGcCGGGCUcGAUCgugGgGCGCuuGCGGg -3'
miRNA:   3'- gCC-GUCCGA-CUAGa--CgUGCGggCGCU- -5'
12830 3' -60.6 NC_003387.1 + 28596 0.75 0.096479
Target:  5'- gGGCAGGCcggGAUagCUGCcgACGCCCGCa- -3'
miRNA:   3'- gCCGUCCGa--CUA--GACG--UGCGGGCGcu -5'
12830 3' -60.6 NC_003387.1 + 29862 0.75 0.108917
Target:  5'- aGuGCAGGCUGAUCagugcgccuUGCGCGCCgaucgcguuggcgauCGCGAg -3'
miRNA:   3'- gC-CGUCCGACUAG---------ACGUGCGG---------------GCGCU- -5'
12830 3' -60.6 NC_003387.1 + 30693 0.66 0.404155
Target:  5'- cCGGCggGGGCguuuUC-GUGCGCCUGCGGg -3'
miRNA:   3'- -GCCG--UCCGacu-AGaCGUGCGGGCGCU- -5'
12830 3' -60.6 NC_003387.1 + 33468 0.67 0.336496
Target:  5'- gCGGCcgaagucgccgAGGC-GGUCg--GCGCCCGCGAu -3'
miRNA:   3'- -GCCG-----------UCCGaCUAGacgUGCGGGCGCU- -5'
12830 3' -60.6 NC_003387.1 + 33599 0.68 0.305898
Target:  5'- cCGGuCGGGUcgaUGAUCgacUGCGCGCCUcCGAa -3'
miRNA:   3'- -GCC-GUCCG---ACUAG---ACGUGCGGGcGCU- -5'
12830 3' -60.6 NC_003387.1 + 33900 0.68 0.305161
Target:  5'- gCGGCGacccgucGGC-GAUCUGCGCGCaaaCCGCc- -3'
miRNA:   3'- -GCCGU-------CCGaCUAGACGUGCG---GGCGcu -5'
12830 3' -60.6 NC_003387.1 + 38911 0.66 0.407756
Target:  5'- gGuGCGGGCguuugcucgcugugGAUCUGCgaGCGCagCGCGAc -3'
miRNA:   3'- gC-CGUCCGa-------------CUAGACG--UGCGg-GCGCU- -5'
12830 3' -60.6 NC_003387.1 + 38938 0.7 0.227015
Target:  5'- uGGCc-GCUGAUCUGCGgcgacgcgaauUGCCgGCGAg -3'
miRNA:   3'- gCCGucCGACUAGACGU-----------GCGGgCGCU- -5'
12830 3' -60.6 NC_003387.1 + 39001 0.7 0.227015
Target:  5'- uGcGCAGGCUGAUCgcccUGCGcCGCCUGgGc -3'
miRNA:   3'- gC-CGUCCGACUAG----ACGU-GCGGGCgCu -5'
12830 3' -60.6 NC_003387.1 + 40938 0.69 0.264076
Target:  5'- aCGGCGaGCUGGUCgccaagGUGCGCgaCGCGAu -3'
miRNA:   3'- -GCCGUcCGACUAGa-----CGUGCGg-GCGCU- -5'
12830 3' -60.6 NC_003387.1 + 42198 0.66 0.421441
Target:  5'- aGGCGGGCgUGcgCgaGCaggacggcgaccgGCGCaCCGCGAu -3'
miRNA:   3'- gCCGUCCG-ACuaGa-CG-------------UGCG-GGCGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.