miRNA display CGI


Results 1 - 20 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12830 3' -60.6 NC_003387.1 + 90 0.71 0.196492
Target:  5'- aGGCAGacacauggaccccgaGCUGA--UGCGCGCCCGCc- -3'
miRNA:   3'- gCCGUC---------------CGACUagACGUGCGGGCGcu -5'
12830 3' -60.6 NC_003387.1 + 479 0.72 0.170515
Target:  5'- cCGGCGcGaGCUGcucGUCgcgaUGCGCGCCCGCGu -3'
miRNA:   3'- -GCCGU-C-CGAC---UAG----ACGUGCGGGCGCu -5'
12830 3' -60.6 NC_003387.1 + 803 0.74 0.123517
Target:  5'- uCGGCAaGCUGAUUUGCGCGaagCGCGAc -3'
miRNA:   3'- -GCCGUcCGACUAGACGUGCgg-GCGCU- -5'
12830 3' -60.6 NC_003387.1 + 2297 0.68 0.291417
Target:  5'- uGGCguacgccgAGGCgacGAUCUGC-CGCCCGaCGu -3'
miRNA:   3'- gCCG--------UCCGa--CUAGACGuGCGGGC-GCu -5'
12830 3' -60.6 NC_003387.1 + 3950 0.67 0.369265
Target:  5'- gCGGCGaGCUGG-CUGCGCcgaGCaCCGCGu -3'
miRNA:   3'- -GCCGUcCGACUaGACGUG---CG-GGCGCu -5'
12830 3' -60.6 NC_003387.1 + 4072 0.66 0.422363
Target:  5'- aCGGCGuGCgGGuUCUgccGCAUGCUCGCGAc -3'
miRNA:   3'- -GCCGUcCGaCU-AGA---CGUGCGGGCGCU- -5'
12830 3' -60.6 NC_003387.1 + 4156 0.69 0.28438
Target:  5'- aGGCGGGCgucgaUGCACGCCuggcaCGUGAc -3'
miRNA:   3'- gCCGUCCGacuagACGUGCGG-----GCGCU- -5'
12830 3' -60.6 NC_003387.1 + 4891 0.67 0.360872
Target:  5'- uCGaCAGGCUGAUCUGC-CGggUGCGGu -3'
miRNA:   3'- -GCcGUCCGACUAGACGuGCggGCGCU- -5'
12830 3' -60.6 NC_003387.1 + 5020 0.68 0.29859
Target:  5'- aCGGCAGGCUcacGAgg-GCgGCGCUgCGCGAg -3'
miRNA:   3'- -GCCGUCCGA---CUagaCG-UGCGG-GCGCU- -5'
12830 3' -60.6 NC_003387.1 + 6834 0.71 0.210192
Target:  5'- gCGGCAGGUcGAUCgcccGCuCGgCCGCGGc -3'
miRNA:   3'- -GCCGUCCGaCUAGa---CGuGCgGGCGCU- -5'
12830 3' -60.6 NC_003387.1 + 6961 0.68 0.320924
Target:  5'- gGGCAGGCgccaCaGCGCGCCCuCGGc -3'
miRNA:   3'- gCCGUCCGacuaGaCGUGCGGGcGCU- -5'
12830 3' -60.6 NC_003387.1 + 7800 0.67 0.336496
Target:  5'- gGuGCAGGCcGAgCUGCaACGCCUgGCGGc -3'
miRNA:   3'- gC-CGUCCGaCUaGACG-UGCGGG-CGCU- -5'
12830 3' -60.6 NC_003387.1 + 7974 0.72 0.170064
Target:  5'- aCGGCGGGCgGGUgCUGCgcuucgGCGCCCcggccggGCGAg -3'
miRNA:   3'- -GCCGUCCGaCUA-GACG------UGCGGG-------CGCU- -5'
12830 3' -60.6 NC_003387.1 + 9670 0.66 0.441055
Target:  5'- gGGCGGuGCggGGUCaGCuCGCCCGUc- -3'
miRNA:   3'- gCCGUC-CGa-CUAGaCGuGCGGGCGcu -5'
12830 3' -60.6 NC_003387.1 + 9708 0.74 0.112562
Target:  5'- aCGGCGGGCUGAUCgagggaaaaucucGCAgGUCUGCGc -3'
miRNA:   3'- -GCCGUCCGACUAGa------------CGUgCGGGCGCu -5'
12830 3' -60.6 NC_003387.1 + 9820 0.66 0.404155
Target:  5'- -uGCAGGCUGcgCauuuugUGCugGCCCcCGGc -3'
miRNA:   3'- gcCGUCCGACuaG------ACGugCGGGcGCU- -5'
12830 3' -60.6 NC_003387.1 + 15395 0.66 0.441055
Target:  5'- gCGGCggGGGCUcGUCcacgGCACGUCgGCGc -3'
miRNA:   3'- -GCCG--UCCGAcUAGa---CGUGCGGgCGCu -5'
12830 3' -60.6 NC_003387.1 + 15992 0.68 0.320924
Target:  5'- gGGCcgcacuGGCUGGUCcgGUACGgCCGCcGAc -3'
miRNA:   3'- gCCGu-----CCGACUAGa-CGUGCgGGCG-CU- -5'
12830 3' -60.6 NC_003387.1 + 18210 0.68 0.29859
Target:  5'- uCGGCGacgcgacgaccGGC-GAcCUGguCGCCCGCGGg -3'
miRNA:   3'- -GCCGU-----------CCGaCUaGACguGCGGGCGCU- -5'
12830 3' -60.6 NC_003387.1 + 18282 0.68 0.323995
Target:  5'- uCGGCAGGCccggCUGCGuuugcugcgcaggaaUGCCgGCGAg -3'
miRNA:   3'- -GCCGUCCGacuaGACGU---------------GCGGgCGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.