miRNA display CGI


Results 1 - 20 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12830 3' -60.6 NC_003387.1 + 22565 0.76 0.083978
Target:  5'- gGcGCAGGCaGAUaacccGCACGCCCGCGGg -3'
miRNA:   3'- gC-CGUCCGaCUAga---CGUGCGGGCGCU- -5'
12830 3' -60.6 NC_003387.1 + 7800 0.67 0.336496
Target:  5'- gGuGCAGGCcGAgCUGCaACGCCUgGCGGc -3'
miRNA:   3'- gC-CGUCCGaCUaGACG-UGCGGG-CGCU- -5'
12830 3' -60.6 NC_003387.1 + 48717 0.66 0.395239
Target:  5'- gGGCcuGGCUGAUCgccGcCACGgCCGCc- -3'
miRNA:   3'- gCCGu-CCGACUAGa--C-GUGCgGGCGcu -5'
12830 3' -60.6 NC_003387.1 + 50941 0.66 0.441055
Target:  5'- -cGCAaaGCUGAUCUGaACGCCagCGCGAa -3'
miRNA:   3'- gcCGUc-CGACUAGACgUGCGG--GCGCU- -5'
12830 3' -60.6 NC_003387.1 + 19359 0.74 0.120196
Target:  5'- gGGCGGGCUcuggUUGcCACGCCUGCGGg -3'
miRNA:   3'- gCCGUCCGAcua-GAC-GUGCGGGCGCU- -5'
12830 3' -60.6 NC_003387.1 + 803 0.74 0.123517
Target:  5'- uCGGCAaGCUGAUUUGCGCGaagCGCGAc -3'
miRNA:   3'- -GCCGUcCGACUAGACGUGCgg-GCGCU- -5'
12830 3' -60.6 NC_003387.1 + 90 0.71 0.196492
Target:  5'- aGGCAGacacauggaccccgaGCUGA--UGCGCGCCCGCc- -3'
miRNA:   3'- gCCGUC---------------CGACUagACGUGCGGGCGcu -5'
12830 3' -60.6 NC_003387.1 + 38938 0.7 0.227015
Target:  5'- uGGCc-GCUGAUCUGCGgcgacgcgaauUGCCgGCGAg -3'
miRNA:   3'- gCCGucCGACUAGACGU-----------GCGGgCGCU- -5'
12830 3' -60.6 NC_003387.1 + 47767 0.69 0.277478
Target:  5'- aCGGCcugaccGGCUGGUCUGuCACGUUcgacaacgCGCGAc -3'
miRNA:   3'- -GCCGu-----CCGACUAGAC-GUGCGG--------GCGCU- -5'
12830 3' -60.6 NC_003387.1 + 15992 0.68 0.320924
Target:  5'- gGGCcgcacuGGCUGGUCcgGUACGgCCGCcGAc -3'
miRNA:   3'- gCCGu-----CCGACUAGa-CGUGCgGGCG-CU- -5'
12830 3' -60.6 NC_003387.1 + 18210 0.68 0.29859
Target:  5'- uCGGCGacgcgacgaccGGC-GAcCUGguCGCCCGCGGg -3'
miRNA:   3'- -GCCGU-----------CCGaCUaGACguGCGGGCGCU- -5'
12830 3' -60.6 NC_003387.1 + 21954 0.69 0.277478
Target:  5'- gCGGCAGGCgucugcgGcgCUGUucaacuacgguGCGCCCgGUGAu -3'
miRNA:   3'- -GCCGUCCGa------CuaGACG-----------UGCGGG-CGCU- -5'
12830 3' -60.6 NC_003387.1 + 48090 0.75 0.104804
Target:  5'- aCGGguGGCg---CUGCcgcuGCGCCCGCGGu -3'
miRNA:   3'- -GCCguCCGacuaGACG----UGCGGGCGCU- -5'
12830 3' -60.6 NC_003387.1 + 33900 0.68 0.305161
Target:  5'- gCGGCGacccgucGGC-GAUCUGCGCGCaaaCCGCc- -3'
miRNA:   3'- -GCCGU-------CCGaCUAGACGUGCG---GGCGcu -5'
12830 3' -60.6 NC_003387.1 + 9708 0.74 0.112562
Target:  5'- aCGGCGGGCUGAUCgagggaaaaucucGCAgGUCUGCGc -3'
miRNA:   3'- -GCCGUCCGACUAGa------------CGUgCGGGCGCu -5'
12830 3' -60.6 NC_003387.1 + 40938 0.69 0.264076
Target:  5'- aCGGCGaGCUGGUCgccaagGUGCGCgaCGCGAu -3'
miRNA:   3'- -GCCGUcCGACUAGa-----CGUGCGg-GCGCU- -5'
12830 3' -60.6 NC_003387.1 + 51200 0.68 0.313343
Target:  5'- uCGGCaccgaGGuGCUGAgcCUGCACGUcggCCGCGGc -3'
miRNA:   3'- -GCCG-----UC-CGACUa-GACGUGCG---GGCGCU- -5'
12830 3' -60.6 NC_003387.1 + 33468 0.67 0.336496
Target:  5'- gCGGCcgaagucgccgAGGC-GGUCg--GCGCCCGCGAu -3'
miRNA:   3'- -GCCG-----------UCCGaCUAGacgUGCGGGCGCU- -5'
12830 3' -60.6 NC_003387.1 + 44455 0.74 0.113802
Target:  5'- aGGCgcugcgcgAGGCg---CUGCACGCCCGCGu -3'
miRNA:   3'- gCCG--------UCCGacuaGACGUGCGGGCGCu -5'
12830 3' -60.6 NC_003387.1 + 479 0.72 0.170515
Target:  5'- cCGGCGcGaGCUGcucGUCgcgaUGCGCGCCCGCGu -3'
miRNA:   3'- -GCCGU-C-CGAC---UAG----ACGUGCGGGCGCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.