Results 1 - 20 of 51 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
12830 | 3' | -60.6 | NC_003387.1 | + | 24399 | 1.08 | 0.00031 |
Target: 5'- cCGGCAGGCUGAUCUGCACGCCCGCGAu -3' miRNA: 3'- -GCCGUCCGACUAGACGUGCGGGCGCU- -5' |
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12830 | 3' | -60.6 | NC_003387.1 | + | 22565 | 0.76 | 0.083978 |
Target: 5'- gGcGCAGGCaGAUaacccGCACGCCCGCGGg -3' miRNA: 3'- gC-CGUCCGaCUAga---CGUGCGGGCGCU- -5' |
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12830 | 3' | -60.6 | NC_003387.1 | + | 28596 | 0.75 | 0.096479 |
Target: 5'- gGGCAGGCcggGAUagCUGCcgACGCCCGCa- -3' miRNA: 3'- gCCGUCCGa--CUA--GACG--UGCGGGCGcu -5' |
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12830 | 3' | -60.6 | NC_003387.1 | + | 48090 | 0.75 | 0.104804 |
Target: 5'- aCGGguGGCg---CUGCcgcuGCGCCCGCGGu -3' miRNA: 3'- -GCCguCCGacuaGACG----UGCGGGCGCU- -5' |
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12830 | 3' | -60.6 | NC_003387.1 | + | 29862 | 0.75 | 0.108917 |
Target: 5'- aGuGCAGGCUGAUCagugcgccuUGCGCGCCgaucgcguuggcgauCGCGAg -3' miRNA: 3'- gC-CGUCCGACUAG---------ACGUGCGG---------------GCGCU- -5' |
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12830 | 3' | -60.6 | NC_003387.1 | + | 9708 | 0.74 | 0.112562 |
Target: 5'- aCGGCGGGCUGAUCgagggaaaaucucGCAgGUCUGCGc -3' miRNA: 3'- -GCCGUCCGACUAGa------------CGUgCGGGCGCu -5' |
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12830 | 3' | -60.6 | NC_003387.1 | + | 44455 | 0.74 | 0.113802 |
Target: 5'- aGGCgcugcgcgAGGCg---CUGCACGCCCGCGu -3' miRNA: 3'- gCCG--------UCCGacuaGACGUGCGGGCGCu -5' |
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12830 | 3' | -60.6 | NC_003387.1 | + | 19359 | 0.74 | 0.120196 |
Target: 5'- gGGCGGGCUcuggUUGcCACGCCUGCGGg -3' miRNA: 3'- gCCGUCCGAcua-GAC-GUGCGGGCGCU- -5' |
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12830 | 3' | -60.6 | NC_003387.1 | + | 803 | 0.74 | 0.123517 |
Target: 5'- uCGGCAaGCUGAUUUGCGCGaagCGCGAc -3' miRNA: 3'- -GCCGUcCGACUAGACGUGCgg-GCGCU- -5' |
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12830 | 3' | -60.6 | NC_003387.1 | + | 7974 | 0.72 | 0.170064 |
Target: 5'- aCGGCGGGCgGGUgCUGCgcuucgGCGCCCcggccggGCGAg -3' miRNA: 3'- -GCCGUCCGaCUA-GACG------UGCGGG-------CGCU- -5' |
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12830 | 3' | -60.6 | NC_003387.1 | + | 479 | 0.72 | 0.170515 |
Target: 5'- cCGGCGcGaGCUGcucGUCgcgaUGCGCGCCCGCGu -3' miRNA: 3'- -GCCGU-C-CGAC---UAG----ACGUGCGGGCGCu -5' |
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12830 | 3' | -60.6 | NC_003387.1 | + | 49591 | 0.71 | 0.184544 |
Target: 5'- cCGGUgaccugagccGGGCUGAUCUGCGCGaccaUCGCc- -3' miRNA: 3'- -GCCG----------UCCGACUAGACGUGCg---GGCGcu -5' |
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12830 | 3' | -60.6 | NC_003387.1 | + | 90 | 0.71 | 0.196492 |
Target: 5'- aGGCAGacacauggaccccgaGCUGA--UGCGCGCCCGCc- -3' miRNA: 3'- gCCGUC---------------CGACUagACGUGCGGGCGcu -5' |
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12830 | 3' | -60.6 | NC_003387.1 | + | 6834 | 0.71 | 0.210192 |
Target: 5'- gCGGCAGGUcGAUCgcccGCuCGgCCGCGGc -3' miRNA: 3'- -GCCGUCCGaCUAGa---CGuGCgGGCGCU- -5' |
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12830 | 3' | -60.6 | NC_003387.1 | + | 38938 | 0.7 | 0.227015 |
Target: 5'- uGGCc-GCUGAUCUGCGgcgacgcgaauUGCCgGCGAg -3' miRNA: 3'- gCCGucCGACUAGACGU-----------GCGGgCGCU- -5' |
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12830 | 3' | -60.6 | NC_003387.1 | + | 39001 | 0.7 | 0.227015 |
Target: 5'- uGcGCAGGCUGAUCgcccUGCGcCGCCUGgGc -3' miRNA: 3'- gC-CGUCCGACUAG----ACGU-GCGGGCgCu -5' |
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12830 | 3' | -60.6 | NC_003387.1 | + | 24578 | 0.7 | 0.244965 |
Target: 5'- uGGcCGGGCUcGAUCgugGgGCGCuuGCGGg -3' miRNA: 3'- gCC-GUCCGA-CUAGa--CgUGCGggCGCU- -5' |
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12830 | 3' | -60.6 | NC_003387.1 | + | 23980 | 0.69 | 0.251204 |
Target: 5'- gGGC-GGCUGGUUgUGCAcCGCCUGCu- -3' miRNA: 3'- gCCGuCCGACUAG-ACGU-GCGGGCGcu -5' |
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12830 | 3' | -60.6 | NC_003387.1 | + | 40938 | 0.69 | 0.264076 |
Target: 5'- aCGGCGaGCUGGUCgccaagGUGCGCgaCGCGAu -3' miRNA: 3'- -GCCGUcCGACUAGa-----CGUGCGg-GCGCU- -5' |
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12830 | 3' | -60.6 | NC_003387.1 | + | 21954 | 0.69 | 0.277478 |
Target: 5'- gCGGCAGGCgucugcgGcgCUGUucaacuacgguGCGCCCgGUGAu -3' miRNA: 3'- -GCCGUCCGa------CuaGACG-----------UGCGGG-CGCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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