miRNA display CGI


Results 21 - 40 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12830 3' -60.6 NC_003387.1 + 47767 0.69 0.277478
Target:  5'- aCGGCcugaccGGCUGGUCUGuCACGUUcgacaacgCGCGAc -3'
miRNA:   3'- -GCCGu-----CCGACUAGAC-GUGCGG--------GCGCU- -5'
12830 3' -60.6 NC_003387.1 + 21954 0.69 0.277478
Target:  5'- gCGGCAGGCgucugcgGcgCUGUucaacuacgguGCGCCCgGUGAu -3'
miRNA:   3'- -GCCGUCCGa------CuaGACG-----------UGCGGG-CGCU- -5'
12830 3' -60.6 NC_003387.1 + 40938 0.69 0.264076
Target:  5'- aCGGCGaGCUGGUCgccaagGUGCGCgaCGCGAu -3'
miRNA:   3'- -GCCGUcCGACUAGa-----CGUGCGg-GCGCU- -5'
12830 3' -60.6 NC_003387.1 + 18210 0.68 0.29859
Target:  5'- uCGGCGacgcgacgaccGGC-GAcCUGguCGCCCGCGGg -3'
miRNA:   3'- -GCCGU-----------CCGaCUaGACguGCGGGCGCU- -5'
12830 3' -60.6 NC_003387.1 + 9820 0.66 0.404155
Target:  5'- -uGCAGGCUGcgCauuuugUGCugGCCCcCGGc -3'
miRNA:   3'- gcCGUCCGACuaG------ACGugCGGGcGCU- -5'
12830 3' -60.6 NC_003387.1 + 24399 1.08 0.00031
Target:  5'- cCGGCAGGCUGAUCUGCACGCCCGCGAu -3'
miRNA:   3'- -GCCGUCCGACUAGACGUGCGGGCGCU- -5'
12830 3' -60.6 NC_003387.1 + 28596 0.75 0.096479
Target:  5'- gGGCAGGCcggGAUagCUGCcgACGCCCGCa- -3'
miRNA:   3'- gCCGUCCGa--CUA--GACG--UGCGGGCGcu -5'
12830 3' -60.6 NC_003387.1 + 52197 0.66 0.38645
Target:  5'- gGGCAGGUgucucggGAUCUucaaccgcGguCGCCaCGCGGg -3'
miRNA:   3'- gCCGUCCGa------CUAGA--------CguGCGG-GCGCU- -5'
12830 3' -60.6 NC_003387.1 + 45951 0.67 0.352611
Target:  5'- uCGGcCAGGUUGAUCUGguucuCGCCgGUGc -3'
miRNA:   3'- -GCC-GUCCGACUAGACgu---GCGGgCGCu -5'
12830 3' -60.6 NC_003387.1 + 20178 0.67 0.352611
Target:  5'- gGGCGcGGUUGAUgcgCUGCuGCGCCuCGCa- -3'
miRNA:   3'- gCCGU-CCGACUA---GACG-UGCGG-GCGcu -5'
12830 3' -60.6 NC_003387.1 + 19637 0.68 0.328642
Target:  5'- aCGGCGGGCgacgCgGuUACGCUCGCGGc -3'
miRNA:   3'- -GCCGUCCGacuaGaC-GUGCGGGCGCU- -5'
12830 3' -60.6 NC_003387.1 + 48409 0.68 0.326312
Target:  5'- uCGGCguugagccacugccGGGUcgcggUGcgCUGCuCGCCCGCGGc -3'
miRNA:   3'- -GCCG--------------UCCG-----ACuaGACGuGCGGGCGCU- -5'
12830 3' -60.6 NC_003387.1 + 18282 0.68 0.323995
Target:  5'- uCGGCAGGCccggCUGCGuuugcugcgcaggaaUGCCgGCGAg -3'
miRNA:   3'- -GCCGUCCGacuaGACGU---------------GCGGgCGCU- -5'
12830 3' -60.6 NC_003387.1 + 6961 0.68 0.320924
Target:  5'- gGGCAGGCgccaCaGCGCGCCCuCGGc -3'
miRNA:   3'- gCCGUCCGacuaGaCGUGCGGGcGCU- -5'
12830 3' -60.6 NC_003387.1 + 24578 0.7 0.244965
Target:  5'- uGGcCGGGCUcGAUCgugGgGCGCuuGCGGg -3'
miRNA:   3'- gCC-GUCCGA-CUAGa--CgUGCGggCGCU- -5'
12830 3' -60.6 NC_003387.1 + 39001 0.7 0.227015
Target:  5'- uGcGCAGGCUGAUCgcccUGCGcCGCCUGgGc -3'
miRNA:   3'- gC-CGUCCGACUAG----ACGU-GCGGGCgCu -5'
12830 3' -60.6 NC_003387.1 + 6834 0.71 0.210192
Target:  5'- gCGGCAGGUcGAUCgcccGCuCGgCCGCGGc -3'
miRNA:   3'- -GCCGUCCGaCUAGa---CGuGCgGGCGCU- -5'
12830 3' -60.6 NC_003387.1 + 49591 0.71 0.184544
Target:  5'- cCGGUgaccugagccGGGCUGAUCUGCGCGaccaUCGCc- -3'
miRNA:   3'- -GCCG----------UCCGACUAGACGUGCg---GGCGcu -5'
12830 3' -60.6 NC_003387.1 + 7974 0.72 0.170064
Target:  5'- aCGGCGGGCgGGUgCUGCgcuucgGCGCCCcggccggGCGAg -3'
miRNA:   3'- -GCCGUCCGaCUA-GACG------UGCGGG-------CGCU- -5'
12830 3' -60.6 NC_003387.1 + 29862 0.75 0.108917
Target:  5'- aGuGCAGGCUGAUCagugcgccuUGCGCGCCgaucgcguuggcgauCGCGAg -3'
miRNA:   3'- gC-CGUCCGACUAG---------ACGUGCGG---------------GCGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.