miRNA display CGI


Results 21 - 40 of 46 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12834 3' -56.2 NC_003387.1 + 22654 0.66 0.629838
Target:  5'- gCUCGccccGGCGGCCgucaggGCGCGcUCGUGGgCGg -3'
miRNA:   3'- -GAGC----CCGUCGG------UGUGCuAGUACCaGC- -5'
12834 3' -56.2 NC_003387.1 + 26229 0.67 0.586158
Target:  5'- cCUCGGGCagcgcauucuuAGCCGCAacaccgccgcCGAUCAgaaUGGUg- -3'
miRNA:   3'- -GAGCCCG-----------UCGGUGU----------GCUAGU---ACCAgc -5'
12834 3' -56.2 NC_003387.1 + 26578 0.66 0.6844
Target:  5'- cCUCGGGgucaGGCCGCGCGAgc--GG-CGa -3'
miRNA:   3'- -GAGCCCg---UCGGUGUGCUaguaCCaGC- -5'
12834 3' -56.2 NC_003387.1 + 28612 0.66 0.629838
Target:  5'- -aCGGGCAcGUCGagguGCGcaucccugaGUCAUGGUCGg -3'
miRNA:   3'- gaGCCCGU-CGGUg---UGC---------UAGUACCAGC- -5'
12834 3' -56.2 NC_003387.1 + 28848 0.68 0.532463
Target:  5'- gUCGGcCAGCCACACcgGGUCGccGGUCc -3'
miRNA:   3'- gAGCCcGUCGGUGUG--CUAGUa-CCAGc -5'
12834 3' -56.2 NC_003387.1 + 30274 0.74 0.247775
Target:  5'- gUCGGGCAGCCACucguaccggagcGCGAaCGUGuaGUCGu -3'
miRNA:   3'- gAGCCCGUCGGUG------------UGCUaGUAC--CAGC- -5'
12834 3' -56.2 NC_003387.1 + 33437 0.66 0.629838
Target:  5'- aUCGGGCuGCCcgAgGCGGUCA-GGcCGc -3'
miRNA:   3'- gAGCCCGuCGG--UgUGCUAGUaCCaGC- -5'
12834 3' -56.2 NC_003387.1 + 33969 0.67 0.564511
Target:  5'- gUCGGGUAugagcuGCCGCAgcgGGUCGcGGUCGa -3'
miRNA:   3'- gAGCCCGU------CGGUGUg--CUAGUaCCAGC- -5'
12834 3' -56.2 NC_003387.1 + 34419 0.68 0.54308
Target:  5'- -cCGGGC-GCCACcgccGCGG-CcgGGUCGg -3'
miRNA:   3'- gaGCCCGuCGGUG----UGCUaGuaCCAGC- -5'
12834 3' -56.2 NC_003387.1 + 35636 0.66 0.673544
Target:  5'- -cCGaGGCGGCCGgGCGggCAcUGGcCGa -3'
miRNA:   3'- gaGC-CCGUCGGUgUGCuaGU-ACCaGC- -5'
12834 3' -56.2 NC_003387.1 + 36000 0.67 0.607957
Target:  5'- aCUCGGcGUcGUCGC-CGAUCAcgaGGUCGa -3'
miRNA:   3'- -GAGCC-CGuCGGUGuGCUAGUa--CCAGC- -5'
12834 3' -56.2 NC_003387.1 + 36852 0.7 0.431392
Target:  5'- cCUCGGGCAGCCACAUGuacgcgCGcacGUUGc -3'
miRNA:   3'- -GAGCCCGUCGGUGUGCua----GUac-CAGC- -5'
12834 3' -56.2 NC_003387.1 + 37145 0.69 0.480638
Target:  5'- gUUGGGCAcucGCUGgGCGGgcgCAUGGUCa -3'
miRNA:   3'- gAGCCCGU---CGGUgUGCUa--GUACCAGc -5'
12834 3' -56.2 NC_003387.1 + 40918 0.66 0.640786
Target:  5'- gUCGGGCgguGGCCugAUGGaCGgcgagcUGGUCGc -3'
miRNA:   3'- gAGCCCG---UCGGugUGCUaGU------ACCAGC- -5'
12834 3' -56.2 NC_003387.1 + 42010 0.68 0.54308
Target:  5'- gUgGGGCcGCCugGCcGUgAUGGUCGc -3'
miRNA:   3'- gAgCCCGuCGGugUGcUAgUACCAGC- -5'
12834 3' -56.2 NC_003387.1 + 42020 0.69 0.446836
Target:  5'- gCUCGcccggcuugauaccGGCGGCCACcgccgagGCGGcCGUGGUCGc -3'
miRNA:   3'- -GAGC--------------CCGUCGGUG-------UGCUaGUACCAGC- -5'
12834 3' -56.2 NC_003387.1 + 42829 0.69 0.501093
Target:  5'- ---cGGCGGCgAgGCGAUCAUGG-CGg -3'
miRNA:   3'- gagcCCGUCGgUgUGCUAGUACCaGC- -5'
12834 3' -56.2 NC_003387.1 + 46588 0.68 0.521923
Target:  5'- cCUCGGGCAgggucGCCAgCACcggcaGGUgCGUGGUCu -3'
miRNA:   3'- -GAGCCCGU-----CGGU-GUG-----CUA-GUACCAGc -5'
12834 3' -56.2 NC_003387.1 + 46937 0.67 0.590508
Target:  5'- -gCGGGCGgcuuguucuggucacGCCAgGCGAUCAgcucGUCGg -3'
miRNA:   3'- gaGCCCGU---------------CGGUgUGCUAGUac--CAGC- -5'
12834 3' -56.2 NC_003387.1 + 47212 0.66 0.6844
Target:  5'- -gCGGGCgAGCCGCugcuCGAUCAccuuGUCa -3'
miRNA:   3'- gaGCCCG-UCGGUGu---GCUAGUac--CAGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.