miRNA display CGI


Results 1 - 20 of 46 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12834 3' -56.2 NC_003387.1 + 778 0.72 0.318475
Target:  5'- gUCGGGCAGCUucucaGCGAgCcgGGUCa -3'
miRNA:   3'- gAGCCCGUCGGug---UGCUaGuaCCAGc -5'
12834 3' -56.2 NC_003387.1 + 1604 0.66 0.651727
Target:  5'- gUCGcaCGGCCugGCGAUUucGGUCGg -3'
miRNA:   3'- gAGCccGUCGGugUGCUAGuaCCAGC- -5'
12834 3' -56.2 NC_003387.1 + 3725 0.66 0.6844
Target:  5'- -gCGGccaCAGCCACGCGAUCGacGGcCGc -3'
miRNA:   3'- gaGCCc--GUCGGUGUGCUAGUa-CCaGC- -5'
12834 3' -56.2 NC_003387.1 + 4495 0.73 0.295784
Target:  5'- -cCGGGC-GCgACACGAUCGUgcgGGUCa -3'
miRNA:   3'- gaGCCCGuCGgUGUGCUAGUA---CCAGc -5'
12834 3' -56.2 NC_003387.1 + 5215 0.67 0.586158
Target:  5'- cCUCGGGUA-CCGCACGAUgcUGcUCGa -3'
miRNA:   3'- -GAGCCCGUcGGUGUGCUAguACcAGC- -5'
12834 3' -56.2 NC_003387.1 + 6326 0.68 0.553764
Target:  5'- -cUGGGCGGCCAgGCGAUCGgcaagaaGcUCGa -3'
miRNA:   3'- gaGCCCGUCGGUgUGCUAGUa------CcAGC- -5'
12834 3' -56.2 NC_003387.1 + 9714 0.67 0.564511
Target:  5'- gCUCGGGguGUUcaGCGCGuacgggucggcGUCAaGGUCGg -3'
miRNA:   3'- -GAGCCCguCGG--UGUGC-----------UAGUaCCAGC- -5'
12834 3' -56.2 NC_003387.1 + 10227 0.66 0.645164
Target:  5'- gUCGGGCauccgcgacgcgaugAGCCGCGcCGAgcgcgggcUCAaGGUCGc -3'
miRNA:   3'- gAGCCCG---------------UCGGUGU-GCU--------AGUaCCAGC- -5'
12834 3' -56.2 NC_003387.1 + 10771 0.66 0.629838
Target:  5'- cCUCGcuGGCGGCCuGCAUcGUCG-GGUCGu -3'
miRNA:   3'- -GAGC--CCGUCGG-UGUGcUAGUaCCAGC- -5'
12834 3' -56.2 NC_003387.1 + 11303 0.66 0.640786
Target:  5'- cCUCGGGUAGCUcgaACAgCGAcUCGUgcugcgccucGGUCGc -3'
miRNA:   3'- -GAGCCCGUCGG---UGU-GCU-AGUA----------CCAGC- -5'
12834 3' -56.2 NC_003387.1 + 12978 0.69 0.448788
Target:  5'- -cCGGGCGGCCACcgACGAcgagcuuaaggcgUCGUcgggcaaGGUCGa -3'
miRNA:   3'- gaGCCCGUCGGUG--UGCU-------------AGUA-------CCAGC- -5'
12834 3' -56.2 NC_003387.1 + 13561 0.66 0.66265
Target:  5'- -cUGGGCAGCCcgaucgacggGCAgGAcgUCGgcUGGUCGc -3'
miRNA:   3'- gaGCCCGUCGG----------UGUgCU--AGU--ACCAGC- -5'
12834 3' -56.2 NC_003387.1 + 14271 0.66 0.651727
Target:  5'- -aCGGGCAGaaCACGCaGUCGUGGg-- -3'
miRNA:   3'- gaGCCCGUCg-GUGUGcUAGUACCagc -5'
12834 3' -56.2 NC_003387.1 + 14737 0.67 0.575311
Target:  5'- gUCGcGCAGCCAggcgucgACGAUC-UGGUCGu -3'
miRNA:   3'- gAGCcCGUCGGUg------UGCUAGuACCAGC- -5'
12834 3' -56.2 NC_003387.1 + 14807 0.71 0.376393
Target:  5'- -gCGGuGCcgAGCCACGCGggCAgcgGGUCGc -3'
miRNA:   3'- gaGCC-CG--UCGGUGUGCuaGUa--CCAGC- -5'
12834 3' -56.2 NC_003387.1 + 17050 0.67 0.618892
Target:  5'- -cCGGGCGucGUCgaggACGCGAUCGagugGGUCGa -3'
miRNA:   3'- gaGCCCGU--CGG----UGUGCUAGUa---CCAGC- -5'
12834 3' -56.2 NC_003387.1 + 18432 0.74 0.246503
Target:  5'- gCUCGGGCAGCCAcguguacgcgcgcacCgugacgcccgacucgGCGAUCAgccGGUCGa -3'
miRNA:   3'- -GAGCCCGUCGGU---------------G---------------UGCUAGUa--CCAGC- -5'
12834 3' -56.2 NC_003387.1 + 20472 0.66 0.651727
Target:  5'- cCUCGGcGaCGGCCAgGCGGUCGgccagcucGUCGc -3'
miRNA:   3'- -GAGCC-C-GUCGGUgUGCUAGUac------CAGC- -5'
12834 3' -56.2 NC_003387.1 + 21775 0.66 0.6844
Target:  5'- -cUGGGCAGCCagcggcGCACGAUC-UGcGaCGg -3'
miRNA:   3'- gaGCCCGUCGG------UGUGCUAGuAC-CaGC- -5'
12834 3' -56.2 NC_003387.1 + 22323 1.08 0.000911
Target:  5'- gCUCGGGCAGCCACACGAUCAUGGUCGu -3'
miRNA:   3'- -GAGCCCGUCGGUGUGCUAGUACCAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.