Results 1 - 20 of 46 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
12834 | 3' | -56.2 | NC_003387.1 | + | 22323 | 1.08 | 0.000911 |
Target: 5'- gCUCGGGCAGCCACACGAUCAUGGUCGu -3' miRNA: 3'- -GAGCCCGUCGGUGUGCUAGUACCAGC- -5' |
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12834 | 3' | -56.2 | NC_003387.1 | + | 18432 | 0.74 | 0.246503 |
Target: 5'- gCUCGGGCAGCCAcguguacgcgcgcacCgugacgcccgacucgGCGAUCAgccGGUCGa -3' miRNA: 3'- -GAGCCCGUCGGU---------------G---------------UGCUAGUa--CCAGC- -5' |
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12834 | 3' | -56.2 | NC_003387.1 | + | 30274 | 0.74 | 0.247775 |
Target: 5'- gUCGGGCAGCCACucguaccggagcGCGAaCGUGuaGUCGu -3' miRNA: 3'- gAGCCCGUCGGUG------------UGCUaGUAC--CAGC- -5' |
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12834 | 3' | -56.2 | NC_003387.1 | + | 4495 | 0.73 | 0.295784 |
Target: 5'- -cCGGGC-GCgACACGAUCGUgcgGGUCa -3' miRNA: 3'- gaGCCCGuCGgUGUGCUAGUA---CCAGc -5' |
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12834 | 3' | -56.2 | NC_003387.1 | + | 778 | 0.72 | 0.318475 |
Target: 5'- gUCGGGCAGCUucucaGCGAgCcgGGUCa -3' miRNA: 3'- gAGCCCGUCGGug---UGCUaGuaCCAGc -5' |
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12834 | 3' | -56.2 | NC_003387.1 | + | 14807 | 0.71 | 0.376393 |
Target: 5'- -gCGGuGCcgAGCCACGCGggCAgcgGGUCGc -3' miRNA: 3'- gaGCC-CG--UCGGUGUGCuaGUa--CCAGC- -5' |
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12834 | 3' | -56.2 | NC_003387.1 | + | 36852 | 0.7 | 0.431392 |
Target: 5'- cCUCGGGCAGCCACAUGuacgcgCGcacGUUGc -3' miRNA: 3'- -GAGCCCGUCGGUGUGCua----GUac-CAGC- -5' |
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12834 | 3' | -56.2 | NC_003387.1 | + | 42020 | 0.69 | 0.446836 |
Target: 5'- gCUCGcccggcuugauaccGGCGGCCACcgccgagGCGGcCGUGGUCGc -3' miRNA: 3'- -GAGC--------------CCGUCGGUG-------UGCUaGUACCAGC- -5' |
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12834 | 3' | -56.2 | NC_003387.1 | + | 12978 | 0.69 | 0.448788 |
Target: 5'- -cCGGGCGGCCACcgACGAcgagcuuaaggcgUCGUcgggcaaGGUCGa -3' miRNA: 3'- gaGCCCGUCGGUG--UGCU-------------AGUA-------CCAGC- -5' |
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12834 | 3' | -56.2 | NC_003387.1 | + | 48810 | 0.69 | 0.480638 |
Target: 5'- -cCGGGCGuuagcacCCAgGCGGUCAgGGUCGg -3' miRNA: 3'- gaGCCCGUc------GGUgUGCUAGUaCCAGC- -5' |
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12834 | 3' | -56.2 | NC_003387.1 | + | 37145 | 0.69 | 0.480638 |
Target: 5'- gUUGGGCAcucGCUGgGCGGgcgCAUGGUCa -3' miRNA: 3'- gAGCCCGU---CGGUgUGCUa--GUACCAGc -5' |
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12834 | 3' | -56.2 | NC_003387.1 | + | 42829 | 0.69 | 0.501093 |
Target: 5'- ---cGGCGGCgAgGCGAUCAUGG-CGg -3' miRNA: 3'- gagcCCGUCGgUgUGCUAGUACCaGC- -5' |
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12834 | 3' | -56.2 | NC_003387.1 | + | 46588 | 0.68 | 0.521923 |
Target: 5'- cCUCGGGCAgggucGCCAgCACcggcaGGUgCGUGGUCu -3' miRNA: 3'- -GAGCCCGU-----CGGU-GUG-----CUA-GUACCAGc -5' |
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12834 | 3' | -56.2 | NC_003387.1 | + | 28848 | 0.68 | 0.532463 |
Target: 5'- gUCGGcCAGCCACACcgGGUCGccGGUCc -3' miRNA: 3'- gAGCCcGUCGGUGUG--CUAGUa-CCAGc -5' |
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12834 | 3' | -56.2 | NC_003387.1 | + | 49790 | 0.68 | 0.532463 |
Target: 5'- -gCGGGUuggcGCCgaaccgcgACACGAUCAgccGGUCGa -3' miRNA: 3'- gaGCCCGu---CGG--------UGUGCUAGUa--CCAGC- -5' |
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12834 | 3' | -56.2 | NC_003387.1 | + | 42010 | 0.68 | 0.54308 |
Target: 5'- gUgGGGCcGCCugGCcGUgAUGGUCGc -3' miRNA: 3'- gAgCCCGuCGGugUGcUAgUACCAGC- -5' |
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12834 | 3' | -56.2 | NC_003387.1 | + | 34419 | 0.68 | 0.54308 |
Target: 5'- -cCGGGC-GCCACcgccGCGG-CcgGGUCGg -3' miRNA: 3'- gaGCCCGuCGGUG----UGCUaGuaCCAGC- -5' |
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12834 | 3' | -56.2 | NC_003387.1 | + | 6326 | 0.68 | 0.553764 |
Target: 5'- -cUGGGCGGCCAgGCGAUCGgcaagaaGcUCGa -3' miRNA: 3'- gaGCCCGUCGGUgUGCUAGUa------CcAGC- -5' |
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12834 | 3' | -56.2 | NC_003387.1 | + | 33969 | 0.67 | 0.564511 |
Target: 5'- gUCGGGUAugagcuGCCGCAgcgGGUCGcGGUCGa -3' miRNA: 3'- gAGCCCGU------CGGUGUg--CUAGUaCCAGC- -5' |
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12834 | 3' | -56.2 | NC_003387.1 | + | 9714 | 0.67 | 0.564511 |
Target: 5'- gCUCGGGguGUUcaGCGCGuacgggucggcGUCAaGGUCGg -3' miRNA: 3'- -GAGCCCguCGG--UGUGC-----------UAGUaCCAGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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