miRNA display CGI


Results 41 - 60 of 71 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12836 5' -59.8 NC_003387.1 + 23832 0.68 0.400367
Target:  5'- aGgGCGcCGCGccgggacUCGGCGccgUGCCGCUCGc -3'
miRNA:   3'- -CgCGCaGCGCa------AGCUGC---ACGGCGGGC- -5'
12836 5' -59.8 NC_003387.1 + 37304 0.68 0.391648
Target:  5'- gGCGCGgucgucgacCGCGc-CGACGUGCCGuggacgagccCCCGc -3'
miRNA:   3'- -CGCGCa--------GCGCaaGCUGCACGGC----------GGGC- -5'
12836 5' -59.8 NC_003387.1 + 40038 0.68 0.390783
Target:  5'- aGCGCGUCgGCGUUCuucauaaggaacuGcaucACGcUGUCGCCCa -3'
miRNA:   3'- -CGCGCAG-CGCAAG-------------C----UGC-ACGGCGGGc -5'
12836 5' -59.8 NC_003387.1 + 26200 0.68 0.383054
Target:  5'- uGCGC-UCGCGcgaCGACGUGCgGCgCu -3'
miRNA:   3'- -CGCGcAGCGCaa-GCUGCACGgCGgGc -5'
12836 5' -59.8 NC_003387.1 + 11776 0.68 0.383054
Target:  5'- uCGCGUCGCGcaccUUGGCGaccagcucGCCGUCCa -3'
miRNA:   3'- cGCGCAGCGCa---AGCUGCa-------CGGCGGGc -5'
12836 5' -59.8 NC_003387.1 + 42948 0.68 0.374586
Target:  5'- ---gGUCGCGcUCGccaaGUGCCGCCCc -3'
miRNA:   3'- cgcgCAGCGCaAGCug--CACGGCGGGc -5'
12836 5' -59.8 NC_003387.1 + 52385 0.68 0.374586
Target:  5'- cGCGCGcaCGCGgaucuuggCGuGCGUGUCGCCgGg -3'
miRNA:   3'- -CGCGCa-GCGCaa------GC-UGCACGGCGGgC- -5'
12836 5' -59.8 NC_003387.1 + 45878 0.68 0.371235
Target:  5'- uGCGCGcCGCGgccgagcgggcgaUCGACcu-CCGCCCGa -3'
miRNA:   3'- -CGCGCaGCGCa------------AGCUGcacGGCGGGC- -5'
12836 5' -59.8 NC_003387.1 + 41825 0.69 0.366246
Target:  5'- aGCGCGUCGCcgcUGACGUGaaacuCGUCCu -3'
miRNA:   3'- -CGCGCAGCGcaaGCUGCACg----GCGGGc -5'
12836 5' -59.8 NC_003387.1 + 17072 0.69 0.358035
Target:  5'- cGCG-GUCGaggUCGGCcaGUGcCCGCCCGg -3'
miRNA:   3'- -CGCgCAGCgcaAGCUG--CAC-GGCGGGC- -5'
12836 5' -59.8 NC_003387.1 + 9618 0.69 0.349953
Target:  5'- cGCGcCGUCGCGcUCGuACccGgCGCCCGu -3'
miRNA:   3'- -CGC-GCAGCGCaAGC-UGcaCgGCGGGC- -5'
12836 5' -59.8 NC_003387.1 + 22675 0.69 0.326495
Target:  5'- gGCGCGcUCGUGggcggugUCGACGgcggcgcugGCgGCCUGg -3'
miRNA:   3'- -CGCGC-AGCGCa------AGCUGCa--------CGgCGGGC- -5'
12836 5' -59.8 NC_003387.1 + 41701 0.69 0.326495
Target:  5'- -gGCGUCGCGgcgcCGACGaagGCgGCCgGg -3'
miRNA:   3'- cgCGCAGCGCaa--GCUGCa--CGgCGGgC- -5'
12836 5' -59.8 NC_003387.1 + 18820 0.7 0.318939
Target:  5'- uGCGCGcagaUCGC---CGACGggucGCCGCCCa -3'
miRNA:   3'- -CGCGC----AGCGcaaGCUGCa---CGGCGGGc -5'
12836 5' -59.8 NC_003387.1 + 52083 0.7 0.318939
Target:  5'- cGgGCGUCGCugccgCGGCGgcgacGCUGCCCu -3'
miRNA:   3'- -CgCGCAGCGcaa--GCUGCa----CGGCGGGc -5'
12836 5' -59.8 NC_003387.1 + 7268 0.7 0.311515
Target:  5'- cCGCuGaCGgGUUCGGCGUGacguucaCGCCCGg -3'
miRNA:   3'- cGCG-CaGCgCAAGCUGCACg------GCGGGC- -5'
12836 5' -59.8 NC_003387.1 + 460 0.7 0.311515
Target:  5'- cGCGCGcUCGgGcgCGGCGuUGCCGUCa- -3'
miRNA:   3'- -CGCGC-AGCgCaaGCUGC-ACGGCGGgc -5'
12836 5' -59.8 NC_003387.1 + 34188 0.7 0.311515
Target:  5'- uGCGUGuUCGCGaaCGccuGCGUGCCaccgcggcgGCCCGa -3'
miRNA:   3'- -CGCGC-AGCGCaaGC---UGCACGG---------CGGGC- -5'
12836 5' -59.8 NC_003387.1 + 27161 0.7 0.297063
Target:  5'- aGCGCGUCGCGaa--GC-UGCUGCCCc -3'
miRNA:   3'- -CGCGCAGCGCaagcUGcACGGCGGGc -5'
12836 5' -59.8 NC_003387.1 + 34286 0.7 0.283137
Target:  5'- gGUGCG-CGCGUaC-ACGUgGCUGCCCGa -3'
miRNA:   3'- -CGCGCaGCGCAaGcUGCA-CGGCGGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.