miRNA display CGI


Results 21 - 40 of 71 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12836 5' -59.8 NC_003387.1 + 48081 0.66 0.484059
Target:  5'- aGCGCcUCGaCGggUGGCGcUGCCGCUg- -3'
miRNA:   3'- -CGCGcAGC-GCaaGCUGC-ACGGCGGgc -5'
12836 5' -59.8 NC_003387.1 + 37102 0.67 0.474332
Target:  5'- cGUGCG-CGCccUCGACGUGCUcgacgucgGCCgGg -3'
miRNA:   3'- -CGCGCaGCGcaAGCUGCACGG--------CGGgC- -5'
12836 5' -59.8 NC_003387.1 + 50744 0.67 0.474332
Target:  5'- cGC-CGUCGCGUUUcAgGUcaagcuggcGCUGCCCGg -3'
miRNA:   3'- -CGcGCAGCGCAAGcUgCA---------CGGCGGGC- -5'
12836 5' -59.8 NC_003387.1 + 2417 0.67 0.474332
Target:  5'- gGCGCaUCGCGUU-GACGgcccaGCCGUUCu -3'
miRNA:   3'- -CGCGcAGCGCAAgCUGCa----CGGCGGGc -5'
12836 5' -59.8 NC_003387.1 + 22513 0.67 0.474332
Target:  5'- gGCGCGcUCGaCG-UCGGCGUaCCgGCUCGg -3'
miRNA:   3'- -CGCGC-AGC-GCaAGCUGCAcGG-CGGGC- -5'
12836 5' -59.8 NC_003387.1 + 30921 0.67 0.464703
Target:  5'- -gGCGUCGC--UCGcCGagcUGCCGCCgCGg -3'
miRNA:   3'- cgCGCAGCGcaAGCuGC---ACGGCGG-GC- -5'
12836 5' -59.8 NC_003387.1 + 46963 0.67 0.461834
Target:  5'- aGCGCGgccgguuccgcuacaUGCGggCGACGacgacgagcgcggGCCGCCUGg -3'
miRNA:   3'- -CGCGCa--------------GCGCaaGCUGCa------------CGGCGGGC- -5'
12836 5' -59.8 NC_003387.1 + 27877 0.67 0.455177
Target:  5'- gGCGCgGUCGagcaGgagccCGGCcaGCCGCCCGa -3'
miRNA:   3'- -CGCG-CAGCg---Caa---GCUGcaCGGCGGGC- -5'
12836 5' -59.8 NC_003387.1 + 44707 0.67 0.455177
Target:  5'- cCGCGUCGgugaCGUUCGuuaUGCCucGCCCGg -3'
miRNA:   3'- cGCGCAGC----GCAAGCugcACGG--CGGGC- -5'
12836 5' -59.8 NC_003387.1 + 18602 0.67 0.455177
Target:  5'- cGCGCacCGCGacgUCGACGccgccgaucUGCCGCCg- -3'
miRNA:   3'- -CGCGcaGCGCa--AGCUGC---------ACGGCGGgc -5'
12836 5' -59.8 NC_003387.1 + 3473 0.67 0.455177
Target:  5'- uGCGCGUCaccccgGCG-UCGAgcaGCCGCUCGg -3'
miRNA:   3'- -CGCGCAG------CGCaAGCUgcaCGGCGGGC- -5'
12836 5' -59.8 NC_003387.1 + 25574 0.67 0.455177
Target:  5'- uCGCGaCGCGcucggauuucUCGAUGaGCUGCCCGg -3'
miRNA:   3'- cGCGCaGCGCa---------AGCUGCaCGGCGGGC- -5'
12836 5' -59.8 NC_003387.1 + 19329 0.67 0.445758
Target:  5'- cGCGCGUgaaugugccUGCGg-CGGCGUcccauCCGCCCGc -3'
miRNA:   3'- -CGCGCA---------GCGCaaGCUGCAc----GGCGGGC- -5'
12836 5' -59.8 NC_003387.1 + 24155 0.67 0.445758
Target:  5'- aGgGCGUCGUcgaCGGCGaucGCCGCCuCGg -3'
miRNA:   3'- -CgCGCAGCGcaaGCUGCa--CGGCGG-GC- -5'
12836 5' -59.8 NC_003387.1 + 5733 0.67 0.427251
Target:  5'- -gGCGgccCGCGcUCGuCGUcGUCGCCCGc -3'
miRNA:   3'- cgCGCa--GCGCaAGCuGCA-CGGCGGGC- -5'
12836 5' -59.8 NC_003387.1 + 49170 0.67 0.423605
Target:  5'- cGCGCaggcgGUCGCGcaggcggcggccgUCGACGuUGCUgaGCCCGc -3'
miRNA:   3'- -CGCG-----CAGCGCa------------AGCUGC-ACGG--CGGGC- -5'
12836 5' -59.8 NC_003387.1 + 901 0.68 0.417269
Target:  5'- gGCGCGcUCGUGUUCGcGCuGUGCaucaagaCGCCUa -3'
miRNA:   3'- -CGCGC-AGCGCAAGC-UG-CACG-------GCGGGc -5'
12836 5' -59.8 NC_003387.1 + 3893 0.68 0.4101
Target:  5'- cGUGCGUCGCGccgagcagcacgacCGGCGggacgaugGCCGCCg- -3'
miRNA:   3'- -CGCGCAGCGCaa------------GCUGCa-------CGGCGGgc -5'
12836 5' -59.8 NC_003387.1 + 39181 0.68 0.409208
Target:  5'- uGCGCGacauUCGCGUgcagcUCGACcagGCC-CCCGc -3'
miRNA:   3'- -CGCGC----AGCGCA-----AGCUGca-CGGcGGGC- -5'
12836 5' -59.8 NC_003387.1 + 23832 0.68 0.400367
Target:  5'- aGgGCGcCGCGccgggacUCGGCGccgUGCCGCUCGc -3'
miRNA:   3'- -CgCGCaGCGCa------AGCUGC---ACGGCGGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.