miRNA display CGI


Results 21 - 40 of 71 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12836 5' -59.8 NC_003387.1 + 37304 0.68 0.391648
Target:  5'- gGCGCGgucgucgacCGCGc-CGACGUGCCGuggacgagccCCCGc -3'
miRNA:   3'- -CGCGCa--------GCGCaaGCUGCACGGC----------GGGC- -5'
12836 5' -59.8 NC_003387.1 + 27161 0.7 0.297063
Target:  5'- aGCGCGUCGCGaa--GC-UGCUGCCCc -3'
miRNA:   3'- -CGCGCAGCGCaagcUGcACGGCGGGc -5'
12836 5' -59.8 NC_003387.1 + 48167 0.66 0.493881
Target:  5'- cGCGCgGUCGCGca-GGCGcagGCCcgcaagguGCCCGc -3'
miRNA:   3'- -CGCG-CAGCGCaagCUGCa--CGG--------CGGGC- -5'
12836 5' -59.8 NC_003387.1 + 27877 0.67 0.455177
Target:  5'- gGCGCgGUCGagcaGgagccCGGCcaGCCGCCCGa -3'
miRNA:   3'- -CGCG-CAGCg---Caa---GCUGcaCGGCGGGC- -5'
12836 5' -59.8 NC_003387.1 + 34286 0.7 0.283137
Target:  5'- gGUGCG-CGCGUaC-ACGUgGCUGCCCGa -3'
miRNA:   3'- -CGCGCaGCGCAaGcUGCA-CGGCGGGC- -5'
12836 5' -59.8 NC_003387.1 + 48081 0.66 0.484059
Target:  5'- aGCGCcUCGaCGggUGGCGcUGCCGCUg- -3'
miRNA:   3'- -CGCGcAGC-GCaaGCUGC-ACGGCGGgc -5'
12836 5' -59.8 NC_003387.1 + 15171 0.71 0.244465
Target:  5'- cGCGCGcCGCGaggugaUCGACGaggagGCCcgcGCCCGg -3'
miRNA:   3'- -CGCGCaGCGCa-----AGCUGCa----CGG---CGGGC- -5'
12836 5' -59.8 NC_003387.1 + 44514 0.72 0.22683
Target:  5'- uUGCGUC-UGUUCGugcCGgGCCGCCCGg -3'
miRNA:   3'- cGCGCAGcGCAAGCu--GCaCGGCGGGC- -5'
12836 5' -59.8 NC_003387.1 + 18602 0.67 0.455177
Target:  5'- cGCGCacCGCGacgUCGACGccgccgaucUGCCGCCg- -3'
miRNA:   3'- -CGCGcaGCGCa--AGCUGC---------ACGGCGGgc -5'
12836 5' -59.8 NC_003387.1 + 4833 0.66 0.534021
Target:  5'- cGCGCuuGUCGg---CGACGUGCaCGCCg- -3'
miRNA:   3'- -CGCG--CAGCgcaaGCUGCACG-GCGGgc -5'
12836 5' -59.8 NC_003387.1 + 45878 0.68 0.371235
Target:  5'- uGCGCGcCGCGgccgagcgggcgaUCGACcu-CCGCCCGa -3'
miRNA:   3'- -CGCGCaGCGCa------------AGCUGcacGGCGGGC- -5'
12836 5' -59.8 NC_003387.1 + 7268 0.7 0.311515
Target:  5'- cCGCuGaCGgGUUCGGCGUGacguucaCGCCCGg -3'
miRNA:   3'- cGCG-CaGCgCAAGCUGCACg------GCGGGC- -5'
12836 5' -59.8 NC_003387.1 + 50744 0.67 0.474332
Target:  5'- cGC-CGUCGCGUUUcAgGUcaagcuggcGCUGCCCGg -3'
miRNA:   3'- -CGcGCAGCGCAAGcUgCA---------CGGCGGGC- -5'
12836 5' -59.8 NC_003387.1 + 13850 0.66 0.493881
Target:  5'- gGCGCGUCuagcuaaCGgcCGGCGaGCCGCCg- -3'
miRNA:   3'- -CGCGCAGc------GCaaGCUGCaCGGCGGgc -5'
12836 5' -59.8 NC_003387.1 + 30921 0.67 0.464703
Target:  5'- -gGCGUCGC--UCGcCGagcUGCCGCCgCGg -3'
miRNA:   3'- cgCGCAGCGcaAGCuGC---ACGGCGG-GC- -5'
12836 5' -59.8 NC_003387.1 + 2417 0.67 0.474332
Target:  5'- gGCGCaUCGCGUU-GACGgcccaGCCGUUCu -3'
miRNA:   3'- -CGCGcAGCGCAAgCUGCa----CGGCGGGc -5'
12836 5' -59.8 NC_003387.1 + 52083 0.7 0.318939
Target:  5'- cGgGCGUCGCugccgCGGCGgcgacGCUGCCCu -3'
miRNA:   3'- -CgCGCAGCGcaa--GCUGCa----CGGCGGGc -5'
12836 5' -59.8 NC_003387.1 + 1999 0.66 0.513791
Target:  5'- -gGCGUCGagGUaacgcUCGACcuuGUGCgCGCCCa -3'
miRNA:   3'- cgCGCAGCg-CA-----AGCUG---CACG-GCGGGc -5'
12836 5' -59.8 NC_003387.1 + 9618 0.69 0.349953
Target:  5'- cGCGcCGUCGCGcUCGuACccGgCGCCCGu -3'
miRNA:   3'- -CGC-GCAGCGCaAGC-UGcaCgGCGGGC- -5'
12836 5' -59.8 NC_003387.1 + 22675 0.69 0.326495
Target:  5'- gGCGCGcUCGUGggcggugUCGACGgcggcgcugGCgGCCUGg -3'
miRNA:   3'- -CGCGC-AGCGCa------AGCUGCa--------CGgCGGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.