Results 1 - 20 of 71 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
12836 | 5' | -59.8 | NC_003387.1 | + | 51888 | 0.77 | 0.097793 |
Target: 5'- gGC-CGUCGCGagaagcucgUCGAgGUGCUGCCCGa -3' miRNA: 3'- -CGcGCAGCGCa--------AGCUgCACGGCGGGC- -5' |
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12836 | 5' | -59.8 | NC_003387.1 | + | 901 | 0.68 | 0.417269 |
Target: 5'- gGCGCGcUCGUGUUCGcGCuGUGCaucaagaCGCCUa -3' miRNA: 3'- -CGCGC-AGCGCAAGC-UG-CACG-------GCGGGc -5' |
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12836 | 5' | -59.8 | NC_003387.1 | + | 27877 | 0.67 | 0.455177 |
Target: 5'- gGCGCgGUCGagcaGgagccCGGCcaGCCGCCCGa -3' miRNA: 3'- -CGCG-CAGCg---Caa---GCUGcaCGGCGGGC- -5' |
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12836 | 5' | -59.8 | NC_003387.1 | + | 17332 | 0.66 | 0.534021 |
Target: 5'- uGCG-GUgGCGcUUCuGCGUGCCGCaaGg -3' miRNA: 3'- -CGCgCAgCGC-AAGcUGCACGGCGggC- -5' |
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12836 | 5' | -59.8 | NC_003387.1 | + | 44514 | 0.72 | 0.22683 |
Target: 5'- uUGCGUC-UGUUCGugcCGgGCCGCCCGg -3' miRNA: 3'- cGCGCAGcGCAAGCu--GCaCGGCGGGC- -5' |
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12836 | 5' | -59.8 | NC_003387.1 | + | 15171 | 0.71 | 0.244465 |
Target: 5'- cGCGCGcCGCGaggugaUCGACGaggagGCCcgcGCCCGg -3' miRNA: 3'- -CGCGCaGCGCa-----AGCUGCa----CGG---CGGGC- -5' |
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12836 | 5' | -59.8 | NC_003387.1 | + | 27161 | 0.7 | 0.297063 |
Target: 5'- aGCGCGUCGCGaa--GC-UGCUGCCCc -3' miRNA: 3'- -CGCGCAGCGCaagcUGcACGGCGGGc -5' |
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12836 | 5' | -59.8 | NC_003387.1 | + | 7268 | 0.7 | 0.311515 |
Target: 5'- cCGCuGaCGgGUUCGGCGUGacguucaCGCCCGg -3' miRNA: 3'- cGCG-CaGCgCAAGCUGCACg------GCGGGC- -5' |
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12836 | 5' | -59.8 | NC_003387.1 | + | 45878 | 0.68 | 0.371235 |
Target: 5'- uGCGCGcCGCGgccgagcgggcgaUCGACcu-CCGCCCGa -3' miRNA: 3'- -CGCGCaGCGCa------------AGCUGcacGGCGGGC- -5' |
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12836 | 5' | -59.8 | NC_003387.1 | + | 39181 | 0.68 | 0.409208 |
Target: 5'- uGCGCGacauUCGCGUgcagcUCGACcagGCC-CCCGc -3' miRNA: 3'- -CGCGC----AGCGCA-----AGCUGca-CGGcGGGC- -5' |
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12836 | 5' | -59.8 | NC_003387.1 | + | 26200 | 0.68 | 0.383054 |
Target: 5'- uGCGC-UCGCGcgaCGACGUGCgGCgCu -3' miRNA: 3'- -CGCGcAGCGCaa-GCUGCACGgCGgGc -5' |
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12836 | 5' | -59.8 | NC_003387.1 | + | 41701 | 0.69 | 0.326495 |
Target: 5'- -gGCGUCGCGgcgcCGACGaagGCgGCCgGg -3' miRNA: 3'- cgCGCAGCGCaa--GCUGCa--CGgCGGgC- -5' |
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12836 | 5' | -59.8 | NC_003387.1 | + | 9792 | 0.76 | 0.115028 |
Target: 5'- gGCGgGUCGCGcuUUCGACGacggGUCGCUCGa -3' miRNA: 3'- -CGCgCAGCGC--AAGCUGCa---CGGCGGGC- -5' |
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12836 | 5' | -59.8 | NC_003387.1 | + | 37304 | 0.68 | 0.391648 |
Target: 5'- gGCGCGgucgucgacCGCGc-CGACGUGCCGuggacgagccCCCGc -3' miRNA: 3'- -CGCGCa--------GCGCaaGCUGCACGGC----------GGGC- -5' |
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12836 | 5' | -59.8 | NC_003387.1 | + | 48842 | 0.74 | 0.162475 |
Target: 5'- gGCGCGaCGCa--CGGCGUGCaCGCCCu -3' miRNA: 3'- -CGCGCaGCGcaaGCUGCACG-GCGGGc -5' |
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12836 | 5' | -59.8 | NC_003387.1 | + | 34188 | 0.7 | 0.311515 |
Target: 5'- uGCGUGuUCGCGaaCGccuGCGUGCCaccgcggcgGCCCGa -3' miRNA: 3'- -CGCGC-AGCGCaaGC---UGCACGG---------CGGGC- -5' |
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12836 | 5' | -59.8 | NC_003387.1 | + | 15867 | 0.68 | 0.400367 |
Target: 5'- cGUGCG-CGCGUaC-AUGUgGCUGCCCGa -3' miRNA: 3'- -CGCGCaGCGCAaGcUGCA-CGGCGGGC- -5' |
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12836 | 5' | -59.8 | NC_003387.1 | + | 49170 | 0.67 | 0.423605 |
Target: 5'- cGCGCaggcgGUCGCGcaggcggcggccgUCGACGuUGCUgaGCCCGc -3' miRNA: 3'- -CGCG-----CAGCGCa------------AGCUGC-ACGG--CGGGC- -5' |
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12836 | 5' | -59.8 | NC_003387.1 | + | 24920 | 0.73 | 0.180301 |
Target: 5'- aGUGCGUugugaccgcCGCGacCGACGgcggGCCGCCUGa -3' miRNA: 3'- -CGCGCA---------GCGCaaGCUGCa---CGGCGGGC- -5' |
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12836 | 5' | -59.8 | NC_003387.1 | + | 34286 | 0.7 | 0.283137 |
Target: 5'- gGUGCG-CGCGUaC-ACGUgGCUGCCCGa -3' miRNA: 3'- -CGCGCaGCGCAaGcUGCA-CGGCGGGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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