miRNA display CGI


Results 1 - 20 of 71 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12836 5' -59.8 NC_003387.1 + 21534 1.11 0.000317
Target:  5'- cGCGCGUCGCGUUCGACGUGCCGCCCGg -3'
miRNA:   3'- -CGCGCAGCGCAAGCUGCACGGCGGGC- -5'
12836 5' -59.8 NC_003387.1 + 51888 0.77 0.097793
Target:  5'- gGC-CGUCGCGagaagcucgUCGAgGUGCUGCCCGa -3'
miRNA:   3'- -CGcGCAGCGCa--------AGCUgCACGGCGGGC- -5'
12836 5' -59.8 NC_003387.1 + 33988 0.77 0.100486
Target:  5'- aGCGgGUCGCGgUCGACGacgaGCUGCCUGc -3'
miRNA:   3'- -CGCgCAGCGCaAGCUGCa---CGGCGGGC- -5'
12836 5' -59.8 NC_003387.1 + 9792 0.76 0.115028
Target:  5'- gGCGgGUCGCGcuUUCGACGacggGUCGCUCGa -3'
miRNA:   3'- -CGCgCAGCGC--AAGCUGCa---CGGCGGGC- -5'
12836 5' -59.8 NC_003387.1 + 48842 0.74 0.162475
Target:  5'- gGCGCGaCGCa--CGGCGUGCaCGCCCu -3'
miRNA:   3'- -CGCGCaGCGcaaGCUGCACG-GCGGGc -5'
12836 5' -59.8 NC_003387.1 + 24920 0.73 0.180301
Target:  5'- aGUGCGUugugaccgcCGCGacCGACGgcggGCCGCCUGa -3'
miRNA:   3'- -CGCGCA---------GCGCaaGCUGCa---CGGCGGGC- -5'
12836 5' -59.8 NC_003387.1 + 39693 0.73 0.196795
Target:  5'- -gGCGUUGCGcagCGACGUGCgggcgcugucgaccuUGCCCGa -3'
miRNA:   3'- cgCGCAGCGCaa-GCUGCACG---------------GCGGGC- -5'
12836 5' -59.8 NC_003387.1 + 44514 0.72 0.22683
Target:  5'- uUGCGUC-UGUUCGugcCGgGCCGCCCGg -3'
miRNA:   3'- cGCGCAGcGCAAGCu--GCaCGGCGGGC- -5'
12836 5' -59.8 NC_003387.1 + 2298 0.72 0.232586
Target:  5'- -gGCGUaCGCcgaggCGACGaucUGCCGCCCGa -3'
miRNA:   3'- cgCGCA-GCGcaa--GCUGC---ACGGCGGGC- -5'
12836 5' -59.8 NC_003387.1 + 11885 0.72 0.238464
Target:  5'- aGCGCGUCGCGcaCGAuCGgcGCCGUCUu -3'
miRNA:   3'- -CGCGCAGCGCaaGCU-GCa-CGGCGGGc -5'
12836 5' -59.8 NC_003387.1 + 15171 0.71 0.244465
Target:  5'- cGCGCGcCGCGaggugaUCGACGaggagGCCcgcGCCCGg -3'
miRNA:   3'- -CGCGCaGCGCa-----AGCUGCa----CGG---CGGGC- -5'
12836 5' -59.8 NC_003387.1 + 34286 0.7 0.283137
Target:  5'- gGUGCG-CGCGUaC-ACGUgGCUGCCCGa -3'
miRNA:   3'- -CGCGCaGCGCAaGcUGCA-CGGCGGGC- -5'
12836 5' -59.8 NC_003387.1 + 27161 0.7 0.297063
Target:  5'- aGCGCGUCGCGaa--GC-UGCUGCCCc -3'
miRNA:   3'- -CGCGCAGCGCaagcUGcACGGCGGGc -5'
12836 5' -59.8 NC_003387.1 + 460 0.7 0.311515
Target:  5'- cGCGCGcUCGgGcgCGGCGuUGCCGUCa- -3'
miRNA:   3'- -CGCGC-AGCgCaaGCUGC-ACGGCGGgc -5'
12836 5' -59.8 NC_003387.1 + 7268 0.7 0.311515
Target:  5'- cCGCuGaCGgGUUCGGCGUGacguucaCGCCCGg -3'
miRNA:   3'- cGCG-CaGCgCAAGCUGCACg------GCGGGC- -5'
12836 5' -59.8 NC_003387.1 + 34188 0.7 0.311515
Target:  5'- uGCGUGuUCGCGaaCGccuGCGUGCCaccgcggcgGCCCGa -3'
miRNA:   3'- -CGCGC-AGCGCaaGC---UGCACGG---------CGGGC- -5'
12836 5' -59.8 NC_003387.1 + 52083 0.7 0.318939
Target:  5'- cGgGCGUCGCugccgCGGCGgcgacGCUGCCCu -3'
miRNA:   3'- -CgCGCAGCGcaa--GCUGCa----CGGCGGGc -5'
12836 5' -59.8 NC_003387.1 + 18820 0.7 0.318939
Target:  5'- uGCGCGcagaUCGC---CGACGggucGCCGCCCa -3'
miRNA:   3'- -CGCGC----AGCGcaaGCUGCa---CGGCGGGc -5'
12836 5' -59.8 NC_003387.1 + 22675 0.69 0.326495
Target:  5'- gGCGCGcUCGUGggcggugUCGACGgcggcgcugGCgGCCUGg -3'
miRNA:   3'- -CGCGC-AGCGCa------AGCUGCa--------CGgCGGGC- -5'
12836 5' -59.8 NC_003387.1 + 41701 0.69 0.326495
Target:  5'- -gGCGUCGCGgcgcCGACGaagGCgGCCgGg -3'
miRNA:   3'- cgCGCAGCGCaa--GCUGCa--CGgCGGgC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.