miRNA display CGI


Results 1 - 20 of 71 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12836 5' -59.8 NC_003387.1 + 116 0.66 0.484059
Target:  5'- uGCGCGccCGCc-UCGAUGcgGUCGCCCu -3'
miRNA:   3'- -CGCGCa-GCGcaAGCUGCa-CGGCGGGc -5'
12836 5' -59.8 NC_003387.1 + 460 0.7 0.311515
Target:  5'- cGCGCGcUCGgGcgCGGCGuUGCCGUCa- -3'
miRNA:   3'- -CGCGC-AGCgCaaGCUGC-ACGGCGGgc -5'
12836 5' -59.8 NC_003387.1 + 901 0.68 0.417269
Target:  5'- gGCGCGcUCGUGUUCGcGCuGUGCaucaagaCGCCUa -3'
miRNA:   3'- -CGCGC-AGCGCAAGC-UG-CACG-------GCGGGc -5'
12836 5' -59.8 NC_003387.1 + 1999 0.66 0.513791
Target:  5'- -gGCGUCGagGUaacgcUCGACcuuGUGCgCGCCCa -3'
miRNA:   3'- cgCGCAGCg-CA-----AGCUG---CACG-GCGGGc -5'
12836 5' -59.8 NC_003387.1 + 2298 0.72 0.232586
Target:  5'- -gGCGUaCGCcgaggCGACGaucUGCCGCCCGa -3'
miRNA:   3'- cgCGCA-GCGcaa--GCUGC---ACGGCGGGC- -5'
12836 5' -59.8 NC_003387.1 + 2417 0.67 0.474332
Target:  5'- gGCGCaUCGCGUU-GACGgcccaGCCGUUCu -3'
miRNA:   3'- -CGCGcAGCGCAAgCUGCa----CGGCGGGc -5'
12836 5' -59.8 NC_003387.1 + 2517 0.66 0.534021
Target:  5'- gGUGaCG-CGCGggUCGuCGuUGCCGuCCCGg -3'
miRNA:   3'- -CGC-GCaGCGCa-AGCuGC-ACGGC-GGGC- -5'
12836 5' -59.8 NC_003387.1 + 3473 0.67 0.455177
Target:  5'- uGCGCGUCaccccgGCG-UCGAgcaGCCGCUCGg -3'
miRNA:   3'- -CGCGCAG------CGCaAGCUgcaCGGCGGGC- -5'
12836 5' -59.8 NC_003387.1 + 3524 0.66 0.501804
Target:  5'- --cCGUUGCGggcucagcaacgUCGACGgccGCCGCCUGc -3'
miRNA:   3'- cgcGCAGCGCa-----------AGCUGCa--CGGCGGGC- -5'
12836 5' -59.8 NC_003387.1 + 3893 0.68 0.4101
Target:  5'- cGUGCGUCGCGccgagcagcacgacCGGCGggacgaugGCCGCCg- -3'
miRNA:   3'- -CGCGCAGCGCaa------------GCUGCa-------CGGCGGgc -5'
12836 5' -59.8 NC_003387.1 + 4833 0.66 0.534021
Target:  5'- cGCGCuuGUCGg---CGACGUGCaCGCCg- -3'
miRNA:   3'- -CGCG--CAGCgcaaGCUGCACG-GCGGgc -5'
12836 5' -59.8 NC_003387.1 + 5733 0.67 0.427251
Target:  5'- -gGCGgccCGCGcUCGuCGUcGUCGCCCGc -3'
miRNA:   3'- cgCGCa--GCGCaAGCuGCA-CGGCGGGC- -5'
12836 5' -59.8 NC_003387.1 + 7268 0.7 0.311515
Target:  5'- cCGCuGaCGgGUUCGGCGUGacguucaCGCCCGg -3'
miRNA:   3'- cGCG-CaGCgCAAGCUGCACg------GCGGGC- -5'
12836 5' -59.8 NC_003387.1 + 7605 0.66 0.513791
Target:  5'- aUGCGUcaccucguacacCGCGgcgUCGACGaccugGCCGCCg- -3'
miRNA:   3'- cGCGCA------------GCGCa--AGCUGCa----CGGCGGgc -5'
12836 5' -59.8 NC_003387.1 + 9618 0.69 0.349953
Target:  5'- cGCGcCGUCGCGcUCGuACccGgCGCCCGu -3'
miRNA:   3'- -CGC-GCAGCGCaAGC-UGcaCgGCGGGC- -5'
12836 5' -59.8 NC_003387.1 + 9792 0.76 0.115028
Target:  5'- gGCGgGUCGCGcuUUCGACGacggGUCGCUCGa -3'
miRNA:   3'- -CGCgCAGCGC--AAGCUGCa---CGGCGGGC- -5'
12836 5' -59.8 NC_003387.1 + 11776 0.68 0.383054
Target:  5'- uCGCGUCGCGcaccUUGGCGaccagcucGCCGUCCa -3'
miRNA:   3'- cGCGCAGCGCa---AGCUGCa-------CGGCGGGc -5'
12836 5' -59.8 NC_003387.1 + 11885 0.72 0.238464
Target:  5'- aGCGCGUCGCGcaCGAuCGgcGCCGUCUu -3'
miRNA:   3'- -CGCGCAGCGCaaGCU-GCa-CGGCGGGc -5'
12836 5' -59.8 NC_003387.1 + 13675 0.66 0.534021
Target:  5'- gGCGcCGUCGaCGcuaugUCGGCGUucgucccgagcGCgGCCCa -3'
miRNA:   3'- -CGC-GCAGC-GCa----AGCUGCA-----------CGgCGGGc -5'
12836 5' -59.8 NC_003387.1 + 13850 0.66 0.493881
Target:  5'- gGCGCGUCuagcuaaCGgcCGGCGaGCCGCCg- -3'
miRNA:   3'- -CGCGCAGc------GCaaGCUGCaCGGCGGgc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.