miRNA display CGI


Results 1 - 20 of 71 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12836 5' -59.8 NC_003387.1 + 52385 0.68 0.374586
Target:  5'- cGCGCGcaCGCGgaucuuggCGuGCGUGUCGCCgGg -3'
miRNA:   3'- -CGCGCa-GCGCaa------GC-UGCACGGCGGgC- -5'
12836 5' -59.8 NC_003387.1 + 52083 0.7 0.318939
Target:  5'- cGgGCGUCGCugccgCGGCGgcgacGCUGCCCu -3'
miRNA:   3'- -CgCGCAGCGcaa--GCUGCa----CGGCGGGc -5'
12836 5' -59.8 NC_003387.1 + 51888 0.77 0.097793
Target:  5'- gGC-CGUCGCGagaagcucgUCGAgGUGCUGCCCGa -3'
miRNA:   3'- -CGcGCAGCGCa--------AGCUgCACGGCGGGC- -5'
12836 5' -59.8 NC_003387.1 + 51521 0.66 0.513791
Target:  5'- -gGCGcCGCGUUCGuCGcgggcaccaUGUCGUCCa -3'
miRNA:   3'- cgCGCaGCGCAAGCuGC---------ACGGCGGGc -5'
12836 5' -59.8 NC_003387.1 + 50744 0.67 0.474332
Target:  5'- cGC-CGUCGCGUUUcAgGUcaagcuggcGCUGCCCGg -3'
miRNA:   3'- -CGcGCAGCGCAAGcUgCA---------CGGCGGGC- -5'
12836 5' -59.8 NC_003387.1 + 49170 0.67 0.423605
Target:  5'- cGCGCaggcgGUCGCGcaggcggcggccgUCGACGuUGCUgaGCCCGc -3'
miRNA:   3'- -CGCG-----CAGCGCa------------AGCUGC-ACGG--CGGGC- -5'
12836 5' -59.8 NC_003387.1 + 48842 0.74 0.162475
Target:  5'- gGCGCGaCGCa--CGGCGUGCaCGCCCu -3'
miRNA:   3'- -CGCGCaGCGcaaGCUGCACG-GCGGGc -5'
12836 5' -59.8 NC_003387.1 + 48167 0.66 0.493881
Target:  5'- cGCGCgGUCGCGca-GGCGcagGCCcgcaagguGCCCGc -3'
miRNA:   3'- -CGCG-CAGCGCaagCUGCa--CGG--------CGGGC- -5'
12836 5' -59.8 NC_003387.1 + 48081 0.66 0.484059
Target:  5'- aGCGCcUCGaCGggUGGCGcUGCCGCUg- -3'
miRNA:   3'- -CGCGcAGC-GCaaGCUGC-ACGGCGGgc -5'
12836 5' -59.8 NC_003387.1 + 46963 0.67 0.461834
Target:  5'- aGCGCGgccgguuccgcuacaUGCGggCGACGacgacgagcgcggGCCGCCUGg -3'
miRNA:   3'- -CGCGCa--------------GCGCaaGCUGCa------------CGGCGGGC- -5'
12836 5' -59.8 NC_003387.1 + 45878 0.68 0.371235
Target:  5'- uGCGCGcCGCGgccgagcgggcgaUCGACcu-CCGCCCGa -3'
miRNA:   3'- -CGCGCaGCGCa------------AGCUGcacGGCGGGC- -5'
12836 5' -59.8 NC_003387.1 + 44707 0.67 0.455177
Target:  5'- cCGCGUCGgugaCGUUCGuuaUGCCucGCCCGg -3'
miRNA:   3'- cGCGCAGC----GCAAGCugcACGG--CGGGC- -5'
12836 5' -59.8 NC_003387.1 + 44514 0.72 0.22683
Target:  5'- uUGCGUC-UGUUCGugcCGgGCCGCCCGg -3'
miRNA:   3'- cGCGCAGcGCAAGCu--GCaCGGCGGGC- -5'
12836 5' -59.8 NC_003387.1 + 42948 0.68 0.374586
Target:  5'- ---gGUCGCGcUCGccaaGUGCCGCCCc -3'
miRNA:   3'- cgcgCAGCGCaAGCug--CACGGCGGGc -5'
12836 5' -59.8 NC_003387.1 + 42697 0.66 0.523869
Target:  5'- gGCGCGcuUCgGCucgUCGuCGUcGUCGCCCGg -3'
miRNA:   3'- -CGCGC--AG-CGca-AGCuGCA-CGGCGGGC- -5'
12836 5' -59.8 NC_003387.1 + 41825 0.69 0.366246
Target:  5'- aGCGCGUCGCcgcUGACGUGaaacuCGUCCu -3'
miRNA:   3'- -CGCGCAGCGcaaGCUGCACg----GCGGGc -5'
12836 5' -59.8 NC_003387.1 + 41701 0.69 0.326495
Target:  5'- -gGCGUCGCGgcgcCGACGaagGCgGCCgGg -3'
miRNA:   3'- cgCGCAGCGCaa--GCUGCa--CGgCGGgC- -5'
12836 5' -59.8 NC_003387.1 + 40038 0.68 0.390783
Target:  5'- aGCGCGUCgGCGUUCuucauaaggaacuGcaucACGcUGUCGCCCa -3'
miRNA:   3'- -CGCGCAG-CGCAAG-------------C----UGC-ACGGCGGGc -5'
12836 5' -59.8 NC_003387.1 + 39883 0.66 0.493881
Target:  5'- gGUGCGguguccaCGCcgcccUUCGGCuUGCCGCCCu -3'
miRNA:   3'- -CGCGCa------GCGc----AAGCUGcACGGCGGGc -5'
12836 5' -59.8 NC_003387.1 + 39693 0.73 0.196795
Target:  5'- -gGCGUUGCGcagCGACGUGCgggcgcugucgaccuUGCCCGa -3'
miRNA:   3'- cgCGCAGCGCaa-GCUGCACG---------------GCGGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.