miRNA display CGI


Results 21 - 40 of 71 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12836 5' -59.8 NC_003387.1 + 15171 0.71 0.244465
Target:  5'- cGCGCGcCGCGaggugaUCGACGaggagGCCcgcGCCCGg -3'
miRNA:   3'- -CGCGCaGCGCa-----AGCUGCa----CGG---CGGGC- -5'
12836 5' -59.8 NC_003387.1 + 15867 0.68 0.400367
Target:  5'- cGUGCG-CGCGUaC-AUGUgGCUGCCCGa -3'
miRNA:   3'- -CGCGCaGCGCAaGcUGCA-CGGCGGGC- -5'
12836 5' -59.8 NC_003387.1 + 15927 0.66 0.534021
Target:  5'- aGCaCGUCGCGgu-GGCGUGCgCGUCgGc -3'
miRNA:   3'- -CGcGCAGCGCaagCUGCACG-GCGGgC- -5'
12836 5' -59.8 NC_003387.1 + 17072 0.69 0.358035
Target:  5'- cGCG-GUCGaggUCGGCcaGUGcCCGCCCGg -3'
miRNA:   3'- -CGCgCAGCgcaAGCUG--CAC-GGCGGGC- -5'
12836 5' -59.8 NC_003387.1 + 17332 0.66 0.534021
Target:  5'- uGCG-GUgGCGcUUCuGCGUGCCGCaaGg -3'
miRNA:   3'- -CGCgCAgCGC-AAGcUGCACGGCGggC- -5'
12836 5' -59.8 NC_003387.1 + 18185 0.66 0.523869
Target:  5'- aCGuCGUCgaGCGggUCGACGgGCaGCCCGa -3'
miRNA:   3'- cGC-GCAG--CGCa-AGCUGCaCGgCGGGC- -5'
12836 5' -59.8 NC_003387.1 + 18602 0.67 0.455177
Target:  5'- cGCGCacCGCGacgUCGACGccgccgaucUGCCGCCg- -3'
miRNA:   3'- -CGCGcaGCGCa--AGCUGC---------ACGGCGGgc -5'
12836 5' -59.8 NC_003387.1 + 18767 0.66 0.493881
Target:  5'- uUGCGUCGCGUgUCGAC-UGCCcuuuGUCgGg -3'
miRNA:   3'- cGCGCAGCGCA-AGCUGcACGG----CGGgC- -5'
12836 5' -59.8 NC_003387.1 + 18820 0.7 0.318939
Target:  5'- uGCGCGcagaUCGC---CGACGggucGCCGCCCa -3'
miRNA:   3'- -CGCGC----AGCGcaaGCUGCa---CGGCGGGc -5'
12836 5' -59.8 NC_003387.1 + 19238 0.66 0.529952
Target:  5'- aCGCGaUCGCGggcgccgaccgccUCGGCGacuucgGCCGCCUu -3'
miRNA:   3'- cGCGC-AGCGCa------------AGCUGCa-----CGGCGGGc -5'
12836 5' -59.8 NC_003387.1 + 19329 0.67 0.445758
Target:  5'- cGCGCGUgaaugugccUGCGg-CGGCGUcccauCCGCCCGc -3'
miRNA:   3'- -CGCGCA---------GCGCaaGCUGCAc----GGCGGGC- -5'
12836 5' -59.8 NC_003387.1 + 21534 1.11 0.000317
Target:  5'- cGCGCGUCGCGUUCGACGUGCCGCCCGg -3'
miRNA:   3'- -CGCGCAGCGCAAGCUGCACGGCGGGC- -5'
12836 5' -59.8 NC_003387.1 + 22513 0.67 0.474332
Target:  5'- gGCGCGcUCGaCG-UCGGCGUaCCgGCUCGg -3'
miRNA:   3'- -CGCGC-AGC-GCaAGCUGCAcGG-CGGGC- -5'
12836 5' -59.8 NC_003387.1 + 22675 0.69 0.326495
Target:  5'- gGCGCGcUCGUGggcggugUCGACGgcggcgcugGCgGCCUGg -3'
miRNA:   3'- -CGCGC-AGCGCa------AGCUGCa--------CGgCGGGC- -5'
12836 5' -59.8 NC_003387.1 + 23832 0.68 0.400367
Target:  5'- aGgGCGcCGCGccgggacUCGGCGccgUGCCGCUCGc -3'
miRNA:   3'- -CgCGCaGCGCa------AGCUGC---ACGGCGGGC- -5'
12836 5' -59.8 NC_003387.1 + 24155 0.67 0.445758
Target:  5'- aGgGCGUCGUcgaCGGCGaucGCCGCCuCGg -3'
miRNA:   3'- -CgCGCAGCGcaaGCUGCa--CGGCGG-GC- -5'
12836 5' -59.8 NC_003387.1 + 24920 0.73 0.180301
Target:  5'- aGUGCGUugugaccgcCGCGacCGACGgcggGCCGCCUGa -3'
miRNA:   3'- -CGCGCA---------GCGCaaGCUGCa---CGGCGGGC- -5'
12836 5' -59.8 NC_003387.1 + 25574 0.67 0.455177
Target:  5'- uCGCGaCGCGcucggauuucUCGAUGaGCUGCCCGg -3'
miRNA:   3'- cGCGCaGCGCa---------AGCUGCaCGGCGGGC- -5'
12836 5' -59.8 NC_003387.1 + 26200 0.68 0.383054
Target:  5'- uGCGC-UCGCGcgaCGACGUGCgGCgCu -3'
miRNA:   3'- -CGCGcAGCGCaa-GCUGCACGgCGgGc -5'
12836 5' -59.8 NC_003387.1 + 27161 0.7 0.297063
Target:  5'- aGCGCGUCGCGaa--GC-UGCUGCCCc -3'
miRNA:   3'- -CGCGCAGCGCaagcUGcACGGCGGGc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.