miRNA display CGI


Results 21 - 40 of 71 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12836 5' -59.8 NC_003387.1 + 9618 0.69 0.349953
Target:  5'- cGCGcCGUCGCGcUCGuACccGgCGCCCGu -3'
miRNA:   3'- -CGC-GCAGCGCaAGC-UGcaCgGCGGGC- -5'
12836 5' -59.8 NC_003387.1 + 17072 0.69 0.358035
Target:  5'- cGCG-GUCGaggUCGGCcaGUGcCCGCCCGg -3'
miRNA:   3'- -CGCgCAGCgcaAGCUG--CAC-GGCGGGC- -5'
12836 5' -59.8 NC_003387.1 + 41825 0.69 0.366246
Target:  5'- aGCGCGUCGCcgcUGACGUGaaacuCGUCCu -3'
miRNA:   3'- -CGCGCAGCGcaaGCUGCACg----GCGGGc -5'
12836 5' -59.8 NC_003387.1 + 45878 0.68 0.371235
Target:  5'- uGCGCGcCGCGgccgagcgggcgaUCGACcu-CCGCCCGa -3'
miRNA:   3'- -CGCGCaGCGCa------------AGCUGcacGGCGGGC- -5'
12836 5' -59.8 NC_003387.1 + 52385 0.68 0.374586
Target:  5'- cGCGCGcaCGCGgaucuuggCGuGCGUGUCGCCgGg -3'
miRNA:   3'- -CGCGCa-GCGCaa------GC-UGCACGGCGGgC- -5'
12836 5' -59.8 NC_003387.1 + 42948 0.68 0.374586
Target:  5'- ---gGUCGCGcUCGccaaGUGCCGCCCc -3'
miRNA:   3'- cgcgCAGCGCaAGCug--CACGGCGGGc -5'
12836 5' -59.8 NC_003387.1 + 26200 0.68 0.383054
Target:  5'- uGCGC-UCGCGcgaCGACGUGCgGCgCu -3'
miRNA:   3'- -CGCGcAGCGCaa-GCUGCACGgCGgGc -5'
12836 5' -59.8 NC_003387.1 + 11776 0.68 0.383054
Target:  5'- uCGCGUCGCGcaccUUGGCGaccagcucGCCGUCCa -3'
miRNA:   3'- cGCGCAGCGCa---AGCUGCa-------CGGCGGGc -5'
12836 5' -59.8 NC_003387.1 + 40038 0.68 0.390783
Target:  5'- aGCGCGUCgGCGUUCuucauaaggaacuGcaucACGcUGUCGCCCa -3'
miRNA:   3'- -CGCGCAG-CGCAAG-------------C----UGC-ACGGCGGGc -5'
12836 5' -59.8 NC_003387.1 + 37304 0.68 0.391648
Target:  5'- gGCGCGgucgucgacCGCGc-CGACGUGCCGuggacgagccCCCGc -3'
miRNA:   3'- -CGCGCa--------GCGCaaGCUGCACGGC----------GGGC- -5'
12836 5' -59.8 NC_003387.1 + 15867 0.68 0.400367
Target:  5'- cGUGCG-CGCGUaC-AUGUgGCUGCCCGa -3'
miRNA:   3'- -CGCGCaGCGCAaGcUGCA-CGGCGGGC- -5'
12836 5' -59.8 NC_003387.1 + 23832 0.68 0.400367
Target:  5'- aGgGCGcCGCGccgggacUCGGCGccgUGCCGCUCGc -3'
miRNA:   3'- -CgCGCaGCGCa------AGCUGC---ACGGCGGGC- -5'
12836 5' -59.8 NC_003387.1 + 39181 0.68 0.409208
Target:  5'- uGCGCGacauUCGCGUgcagcUCGACcagGCC-CCCGc -3'
miRNA:   3'- -CGCGC----AGCGCA-----AGCUGca-CGGcGGGC- -5'
12836 5' -59.8 NC_003387.1 + 3893 0.68 0.4101
Target:  5'- cGUGCGUCGCGccgagcagcacgacCGGCGggacgaugGCCGCCg- -3'
miRNA:   3'- -CGCGCAGCGCaa------------GCUGCa-------CGGCGGgc -5'
12836 5' -59.8 NC_003387.1 + 901 0.68 0.417269
Target:  5'- gGCGCGcUCGUGUUCGcGCuGUGCaucaagaCGCCUa -3'
miRNA:   3'- -CGCGC-AGCGCAAGC-UG-CACG-------GCGGGc -5'
12836 5' -59.8 NC_003387.1 + 49170 0.67 0.423605
Target:  5'- cGCGCaggcgGUCGCGcaggcggcggccgUCGACGuUGCUgaGCCCGc -3'
miRNA:   3'- -CGCG-----CAGCGCa------------AGCUGC-ACGG--CGGGC- -5'
12836 5' -59.8 NC_003387.1 + 5733 0.67 0.427251
Target:  5'- -gGCGgccCGCGcUCGuCGUcGUCGCCCGc -3'
miRNA:   3'- cgCGCa--GCGCaAGCuGCA-CGGCGGGC- -5'
12836 5' -59.8 NC_003387.1 + 19329 0.67 0.445758
Target:  5'- cGCGCGUgaaugugccUGCGg-CGGCGUcccauCCGCCCGc -3'
miRNA:   3'- -CGCGCA---------GCGCaaGCUGCAc----GGCGGGC- -5'
12836 5' -59.8 NC_003387.1 + 24155 0.67 0.445758
Target:  5'- aGgGCGUCGUcgaCGGCGaucGCCGCCuCGg -3'
miRNA:   3'- -CgCGCAGCGcaaGCUGCa--CGGCGG-GC- -5'
12836 5' -59.8 NC_003387.1 + 3473 0.67 0.455177
Target:  5'- uGCGCGUCaccccgGCG-UCGAgcaGCCGCUCGg -3'
miRNA:   3'- -CGCGCAG------CGCaAGCUgcaCGGCGGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.