Results 1 - 20 of 71 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
12836 | 5' | -59.8 | NC_003387.1 | + | 3893 | 0.68 | 0.4101 |
Target: 5'- cGUGCGUCGCGccgagcagcacgacCGGCGggacgaugGCCGCCg- -3' miRNA: 3'- -CGCGCAGCGCaa------------GCUGCa-------CGGCGGgc -5' |
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12836 | 5' | -59.8 | NC_003387.1 | + | 22513 | 0.67 | 0.474332 |
Target: 5'- gGCGCGcUCGaCG-UCGGCGUaCCgGCUCGg -3' miRNA: 3'- -CGCGC-AGC-GCaAGCUGCAcGG-CGGGC- -5' |
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12836 | 5' | -59.8 | NC_003387.1 | + | 2417 | 0.67 | 0.474332 |
Target: 5'- gGCGCaUCGCGUU-GACGgcccaGCCGUUCu -3' miRNA: 3'- -CGCGcAGCGCAAgCUGCa----CGGCGGGc -5' |
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12836 | 5' | -59.8 | NC_003387.1 | + | 30921 | 0.67 | 0.464703 |
Target: 5'- -gGCGUCGC--UCGcCGagcUGCCGCCgCGg -3' miRNA: 3'- cgCGCAGCGcaAGCuGC---ACGGCGG-GC- -5' |
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12836 | 5' | -59.8 | NC_003387.1 | + | 25574 | 0.67 | 0.455177 |
Target: 5'- uCGCGaCGCGcucggauuucUCGAUGaGCUGCCCGg -3' miRNA: 3'- cGCGCaGCGCa---------AGCUGCaCGGCGGGC- -5' |
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12836 | 5' | -59.8 | NC_003387.1 | + | 3473 | 0.67 | 0.455177 |
Target: 5'- uGCGCGUCaccccgGCG-UCGAgcaGCCGCUCGg -3' miRNA: 3'- -CGCGCAG------CGCaAGCUgcaCGGCGGGC- -5' |
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12836 | 5' | -59.8 | NC_003387.1 | + | 19329 | 0.67 | 0.445758 |
Target: 5'- cGCGCGUgaaugugccUGCGg-CGGCGUcccauCCGCCCGc -3' miRNA: 3'- -CGCGCA---------GCGCaaGCUGCAc----GGCGGGC- -5' |
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12836 | 5' | -59.8 | NC_003387.1 | + | 24155 | 0.67 | 0.445758 |
Target: 5'- aGgGCGUCGUcgaCGGCGaucGCCGCCuCGg -3' miRNA: 3'- -CgCGCAGCGcaaGCUGCa--CGGCGG-GC- -5' |
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12836 | 5' | -59.8 | NC_003387.1 | + | 5733 | 0.67 | 0.427251 |
Target: 5'- -gGCGgccCGCGcUCGuCGUcGUCGCCCGc -3' miRNA: 3'- cgCGCa--GCGCaAGCuGCA-CGGCGGGC- -5' |
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12836 | 5' | -59.8 | NC_003387.1 | + | 18767 | 0.66 | 0.493881 |
Target: 5'- uUGCGUCGCGUgUCGAC-UGCCcuuuGUCgGg -3' miRNA: 3'- cGCGCAGCGCA-AGCUGcACGG----CGGgC- -5' |
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12836 | 5' | -59.8 | NC_003387.1 | + | 39883 | 0.66 | 0.493881 |
Target: 5'- gGUGCGguguccaCGCcgcccUUCGGCuUGCCGCCCu -3' miRNA: 3'- -CGCGCa------GCGc----AAGCUGcACGGCGGGc -5' |
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12836 | 5' | -59.8 | NC_003387.1 | + | 3524 | 0.66 | 0.501804 |
Target: 5'- --cCGUUGCGggcucagcaacgUCGACGgccGCCGCCUGc -3' miRNA: 3'- cgcGCAGCGCa-----------AGCUGCa--CGGCGGGC- -5' |
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12836 | 5' | -59.8 | NC_003387.1 | + | 2517 | 0.66 | 0.534021 |
Target: 5'- gGUGaCG-CGCGggUCGuCGuUGCCGuCCCGg -3' miRNA: 3'- -CGC-GCaGCGCa-AGCuGC-ACGGC-GGGC- -5' |
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12836 | 5' | -59.8 | NC_003387.1 | + | 19238 | 0.66 | 0.529952 |
Target: 5'- aCGCGaUCGCGggcgccgaccgccUCGGCGacuucgGCCGCCUu -3' miRNA: 3'- cGCGC-AGCGCa------------AGCUGCa-----CGGCGGGc -5' |
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12836 | 5' | -59.8 | NC_003387.1 | + | 42697 | 0.66 | 0.523869 |
Target: 5'- gGCGCGcuUCgGCucgUCGuCGUcGUCGCCCGg -3' miRNA: 3'- -CGCGC--AG-CGca-AGCuGCA-CGGCGGGC- -5' |
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12836 | 5' | -59.8 | NC_003387.1 | + | 18185 | 0.66 | 0.523869 |
Target: 5'- aCGuCGUCgaGCGggUCGACGgGCaGCCCGa -3' miRNA: 3'- cGC-GCAG--CGCa-AGCUGCaCGgCGGGC- -5' |
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12836 | 5' | -59.8 | NC_003387.1 | + | 7605 | 0.66 | 0.513791 |
Target: 5'- aUGCGUcaccucguacacCGCGgcgUCGACGaccugGCCGCCg- -3' miRNA: 3'- cGCGCA------------GCGCa--AGCUGCa----CGGCGGgc -5' |
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12836 | 5' | -59.8 | NC_003387.1 | + | 1999 | 0.66 | 0.513791 |
Target: 5'- -gGCGUCGagGUaacgcUCGACcuuGUGCgCGCCCa -3' miRNA: 3'- cgCGCAGCg-CA-----AGCUG---CACG-GCGGGc -5' |
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12836 | 5' | -59.8 | NC_003387.1 | + | 51521 | 0.66 | 0.513791 |
Target: 5'- -gGCGcCGCGUUCGuCGcgggcaccaUGUCGUCCa -3' miRNA: 3'- cgCGCaGCGCAAGCuGC---------ACGGCGGGc -5' |
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12836 | 5' | -59.8 | NC_003387.1 | + | 33559 | 0.66 | 0.501804 |
Target: 5'- cGUGCGggcCGCGcccucgacagcgUCGACGaGCCaccGCCCGg -3' miRNA: 3'- -CGCGCa--GCGCa-----------AGCUGCaCGG---CGGGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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